Multiplexed mass spectrometry of individual ions improves measurement of proteoforms and their complexes von Kafader, Jared O., Melani, Rafael D., Durbin, Kenneth R., Ikwuagwu, Bon, Early, Bryan P., Fellers, Ryan T., Beu, Steven C., Zabrouskov, Vlad, Makarov, Alexander A., Maze, Joshua T., Shinholt, Deven L., Yip, Ping F., Tullman-Ercek, Danielle, Senko, Michael W., Compton, Philip D., Kelleher, Neil L.

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Neprosin, a Selective Prolyl Endoprotease for Bottom-up Proteomics and Histone Mapping von Schräder, Christoph U., Lee, Linda, Rey, Martial, Sarpe, Vladimir, Man, Petr, Sharma, Seema, Zabrouskov, Vlad, Larsen, Brett, Schriemer, David C.

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Increased Selectivity, Analytical Precision, and Throughput in Targeted Proteomics von Kiyonami, Reiko, Schoen, Alan, Prakash, Amol, Peterman, Scott, Zabrouskov, Vlad, Picotti, Paola, Aebersold, Ruedi, Huhmer, Andreas, Domon, Bruno

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STORI Plots Enable Accurate Tracking of Individual Ion Signals von Kafader, Jared O., Beu, Steven C., Early, Bryan P., Melani, Rafael D., Durbin, Kenneth R., Zabrouskov, Vlad, Makarov, Alexander A., Maze, Joshua T., Shinholt, Deven L., Yip, Ping F., Kelleher, Neil L., Compton, Philip D., Senko, Michael W.

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Improved Precursor Characterization for Data-Dependent Mass Spectrometry von Hebert, Alexander S, Thöing, Christian, Riley, Nicholas M, Kwiecien, Nicholas W, Shiskova, Evgenia, Huguet, Romain, Cardasis, Helene L, Kuehn, Andreas, Eliuk, Shannon, Zabrouskov, Vlad, Westphall, Michael S, McAlister, Graeme C, Coon, Joshua J

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Unabridged Analysis of Human Histone H3 by Differential Top-Down Mass Spectrometry Reveals Hypermethylated Proteoforms from MMSET/NSD2 Overexpression von Zheng, Yupeng, Fornelli, Luca, Compton, Philip D., Sharma, Seema, Canterbury, Jesse, Mullen, Christopher, Zabrouskov, Vlad, Fellers, Ryan T., Thomas, Paul M., Licht, Jonathan D., Senko, Michael W., Kelleher, Neil L.

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Fast and deep phosphoproteome analysis with the Orbitrap Astral mass spectrometer von Lancaster, Noah M., Sinitcyn, Pavel, Forny, Patrick, Peters-Clarke, Trenton M., Fecher, Caroline, Smith, Andrew J., Shishkova, Evgenia, Arrey, Tabiwang N., Pashkova, Anna, Robinson, Margaret Lea, Arp, Nicholas, Fan, Jing, Hansen, Juli, Galmozzi, Andrea, Serrano, Lia R., Rojas, Julie, Gasch, Audrey P., Westphall, Michael S., Stewart, Hamish, Hock, Christian, Damoc, Eugen, Pagliarini, David J., Zabrouskov, Vlad, Coon, Joshua J.

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Dual-Pressure Linear Ion Trap Mass Spectrometer Improving the Analysis of Complex Protein Mixtures von Pekar Second, Tonya, Blethrow, Justin D, Schwartz, Jae C, Merrihew, Gennifer E, MacCoss, Michael J, Swaney, Danielle L, Russell, Jason D, Coon, Joshua J, Zabrouskov, Vlad

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Mass Measurement and Top-Down HPLC/MS Analysis of Intact Monoclonal Antibodies on a Hybrid Linear Quadrupole Ion Trap–Orbitrap Mass Spectrometer von Bondarenko, Pavel V., Second, Tonya P., Zabrouskov, Vlad, Makarov, Alexander A., Zhang, Zhongqi

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Unraveling Molecular Complexity of Phosphorylated Human Cardiac Troponin I by Top Down Electron Capture Dissociation/Electron Transfer Dissociation Mass Spectrometry von Zabrouskov, Vlad, Ge, Ying, Schwartz, Jae, Walker, Jeffery W.

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Ultra-fast label-free quantification and comprehensive proteome coverage with narrow-window data-independent acquisition von Guzman, Ulises H., Martinez-Val, Ana, Ye, Zilu, Damoc, Eugen, Arrey, Tabiwang N., Pashkova, Anna, Renuse, Santosh, Denisov, Eduard, Petzoldt, Johannes, Peterson, Amelia C., Harking, Florian, Østergaard, Ole, Rydbirk, Rasmus, Aznar, Susana, Stewart, Hamish, Xuan, Yue, Hermanson, Daniel, Horning, Stevan, Hock, Christian, Makarov, Alexander, Zabrouskov, Vlad, Olsen, Jesper V.

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Accurate Sequence Analysis of a Monoclonal Antibody by Top-Down and Middle-Down Orbitrap Mass Spectrometry Applying Multiple Ion Activation Techniques von Fornelli, Luca, Srzentić, Kristina, Huguet, Romain, Mullen, Christopher, Sharma, Seema, Zabrouskov, Vlad, Fellers, Ryan T, Durbin, Kenneth R, Compton, Philip D, Kelleher, Neil L

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Abstract 1409 Using next-generation LC-MS to disentangle complex cell hierarchies von Schoof, Erwin, Petrosius, Valdemaras, Fernández, Pedro Aragón, Arrey, Tabiwang, Üresin, Nil, Furtwängler, Benjamin, Damoc, Eugen, Zabrouskov, Vlad, Porse, Bo

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Real-Time Search-Assisted Acquisition on a Tribrid Mass Spectrometer Improves Coverage in Multiplexed Single-Cell Proteomics von Furtwängler, Benjamin, Üresin, Nil, Motamedchaboki, Khatereh, Huguet, Romain, Lopez-Ferrer, Daniel, Zabrouskov, Vlad, Porse, Bo T., Schoof, Erwin M.

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Characterization and Optimization of Multiplexed Quantitative Analyses Using High-Field Asymmetric-Waveform Ion Mobility Mass Spectrometry von Schweppe, Devin K, Prasad, Satendra, Belford, Michael W, Navarrete-Perea, José, Bailey, Derek J, Huguet, Romain, Jedrychowski, Mark P, Rad, Ramin, McAlister, Graeme, Abbatiello, Susan E, Woulters, Eloy R, Zabrouskov, Vlad, Dunyach, Jean-Jacques, Paulo, João A, Gygi, Steven P

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Multiplexed MS/MS for improved data-independent acquisition von Egertson, Jarrett D, Kuehn, Andreas, Merrihew, Gennifer E, Bateman, Nicholas W, MacLean, Brendan X, Ting, Ying S, Canterbury, Jesse D, Marsh, Donald M, Kellmann, Markus, Zabrouskov, Vlad, Wu, Christine C, MacCoss, Michael J

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Evaluating the Performance of the Astral Mass Analyzer for Quantitative Proteomics Using Data-Independent Acquisition von Heil, Lilian R., Damoc, Eugen, Arrey, Tabiwang N., Pashkova, Anna, Denisov, Eduard, Petzoldt, Johannes, Peterson, Amelia C., Hsu, Chris, Searle, Brian C., Shulman, Nicholas, Riffle, Michael, Connolly, Brian, MacLean, Brendan X., Remes, Philip M., Senko, Michael W., Stewart, Hamish I., Hock, Christian, Makarov, Alexander A., Hermanson, Daniel, Zabrouskov, Vlad, Wu, Christine C., MacCoss, Michael J.

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Proton Transfer Charge Reduction Enables High-Throughput Top-Down Analysis of Large Proteoforms von Huguet, Romain, Mullen, Christopher, Srzentić, Kristina, Greer, Joseph B, Fellers, Ryan T, Zabrouskov, Vlad, Syka, John E. P, Kelleher, Neil L, Fornelli, Luca

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Top-Down Hydrogen–Deuterium Exchange Analysis of Protein Structures Using Ultraviolet Photodissociation von Brodie, Nicholas I, Huguet, Romain, Zhang, Terry, Viner, Rosa, Zabrouskov, Vlad, Pan, Jingxi, Petrotchenko, Evgeniy V, Borchers, Christoph H

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Parallelized Acquisition of Orbitrap and Astral Analyzers Enables High-Throughput Quantitative Analysis von Stewart, Hamish I., Grinfeld, Dmitry, Giannakopulos, Anastassios, Petzoldt, Johannes, Shanley, Toby, Garland, Matthew, Denisov, Eduard, Peterson, Amelia C., Damoc, Eugen, Zeller, Martin, Arrey, Tabiwang N., Pashkova, Anna, Renuse, Santosh, Hakimi, Amirmansoor, Kühn, Andreas, Biel, Matthias, Kreutzmann, Arne, Hagedorn, Bernd, Colonius, Immo, Schütz, Adrian, Stefes, Arne, Dwivedi, Ankit, Mourad, Daniel, Hoek, Max, Reitemeier, Bastian, Cochems, Philipp, Kholomeev, Alexander, Ostermann, Robert, Quiring, Gregor, Ochmann, Maximilian, Möhring, Sascha, Wagner, Alexander, Petker, André, Kanngiesser, Sebastian, Wiedemeyer, Michael, Balschun, Wilko, Hermanson, Daniel, Zabrouskov, Vlad, Makarov, Alexander A., Hock, Christian

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