miR-802 regulates Paneth cell function and enterocyte differentiation in the mouse small intestine von Goga, Algera, Yagabasan, Büsra, Herrmanns, Karolin, Godbersen, Svenja, Silva, Pamuditha N., Denzler, Remy, Zünd, Mirjam, Furter, Markus, Schwank, Gerald, Sunagawa, Shinichi, Hardt, Wolf-Dietrich, Stoffel, Markus

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What Lies Beneath? Taking the Plunge into the Murky Waters of Phage Biology von Zünd, Mirjam, Dunham, Sage J B, Rothman, Jason A, Whiteson, Katrine L

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Mucosal or systemic microbiota exposures shape the B cell repertoire von Li, Hai, Limenitakis, Julien P., Greiff, Victor, Yilmaz, Bahtiyar, Schären, Olivier, Urbaniak, Camilla, Zünd, Mirjam, Lawson, Melissa A. E., Young, Ian D., Rupp, Sandra, Heikenwälder, Mathias, McCoy, Kathy D., Hapfelmeier, Siegfried, Ganal-Vonarburg, Stephanie C., Macpherson, Andrew J.

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Escherichia coli limits Salmonella Typhimurium infections after diet shifts and fat-mediated microbiota perturbation in mice von Wotzka, Sandra Y., Kreuzer, Markus, Maier, Lisa, Arnoldini, Markus, Nguyen, Bidong D., Brachmann, Alexander O., Berthold, Dorothée L., Zünd, Mirjam, Hausmann, Annika, Bakkeren, Erik, Hoces, Daniel, Gül, Ersin, Beutler, Markus, Dolowschiak, Tamas, Zimmermann, Michael, Fuhrer, Tobias, Moor, Kathrin, Sauer, Uwe, Typas, Athanasios, Piel, Jörn, Diard, Médéric, Macpherson, Andrew J., Stecher, Bärbel, Sunagawa, Shinichi, Slack, Emma, Hardt, Wolf-Dietrich

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Microbiota stability in healthy individuals after single-dose lactulose challenge-A randomized controlled study von Wotzka, Sandra Y, Kreuzer, Markus, Maier, Lisa, Zünd, Mirjam, Schlumberger, Markus, Nguyen, Bidong, Fox, Mark, Pohl, Daniel, Heinrich, Henriette, Rogler, Gerhard, Biedermann, Luc, Scharl, Michael, Sunagawa, Shinichi, Hardt, Wolf-Dietrich, Misselwitz, Benjamin

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High throughput sequencing provides exact genomic locations of inducible prophages and accurate phage-to-host ratios in gut microbial strains von Zund, Mirjam, Ruscheweyh, Hans-Joachim, Field, Christopher M., Meyer, Natalie, Cuenca, Miguelangel, Hoces, Daniel, Hardt, Wolf-Dietrich, Sunagawa, Shinichi

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Germ‐free and microbiota‐associated mice yield small intestinal epithelial organoids with equivalent and robust transcriptome/proteome expression phenotypes von Hausmann, Annika, Russo, Giancarlo, Grossmann, Jonas, Zünd, Mirjam, Schwank, Gerald, Aebersold, Ruedi, Liu, Yansheng, Sellin, Mikael E., Hardt, Wolf‐Dietrich

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miR-802 regulates Paneth cell function and enterocyte differentiation in the mouse small intestine von Goga, Algera, Yagabasan, Büsra, Herrmanns, Karolin, Godbersen, Svenja, Silva, Pamuditha N, Denzler, Remy, Zünd, Mirjam, Furter, Markus, Schwank, Gerald, Sunagawa, Shinichi, Hardt, Wolf-Dietrich, Stoffel, Markus

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Germ-free and microbiota-associated mice yield small intestinal epithelial organoids with equivalent and robust transcriptome/proteome expression phenotypes von Hausmann, Annika, Russo, Giancarlo, Grossmann, Jonas, Zünd, Mirjam, Schwank, Gerald, Aebersold, Ruedi, Liu, Yansheng, Sellin, Mikael E, Hardt, Wolf-Dietrich

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Escherichia coli limits Salmonella Typhimurium infections after diet shifts and fat-mediated microbiota perturbation in mice von Wotzka, Sandra Y., Kreuzer, Markus, Maier, Lisa, Arnoldini, Markus, Nguyen, Bidong D., Brachmann, Alexander O., Berthold, Dorothée L., Zünd, Mirjam, Hausmann, Annika, Bakkeren, Erik, Hoces, Daniel, Gül, Ersin, Beutler, Markus, Dolowschiak, Tamas, Zimmermann, Michael, Fuhrer, Tobias, Moor, Kathrin, Sauer, Uwe, Typas, Athanasios, Piel, Jörn, Diard, Médéric, Macpherson, Andrew J., Stecher, Bärbel, Sunagawa, Shinichi, Slack, Emma, Hardt, Wolf-Dietrich

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Microbiota stability in healthy individuals after single-dose lactulose challenge-A randomized controlled study von Wotzka, Sandra Y, Kreuzer, Markus, Maier, Lisa, Zünd, Mirjam, Schlumberger, Markus, Nguyen, Bidong, Fox, Mark, Pohl, Daniel, Heinrich, Henriette, Rogler, Gerhard, Biedermann, Luc, Scharl, Michael, Sunagawa, Shinichi, Hardt, Wolf-Dietrich, Misselwitz, Benjamin

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R script for identification and localisation of prophage within bacterial genomes using outward-oriented paired-end reads von Zünd, Mirjam, Ruschewey, Hans-Joachim, Sunagawa, Shinichi

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Germ-free and microbiota-associated mice yield small intestinal epithelial organoids with equivalent and robust transcriptome/proteome expression phenotypes von Hausmann, Annika, Russo, Giancarlo, Grossmann, Jonas, Zünd, Mirjam, Schwank, Gerald, Aebersold, Ruedi, Liu, Yansheng, Sellin, Mikael E, Hardt, Wolf-Dietrich

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Additional file 3 of High throughput sequencing provides exact genomic locations of inducible prophages and accurate phage-to-host ratios in gut microbial strains von Zünd, Mirjam, Hans-Joachim Ruscheweyh, Field, Christopher M., Meyer, Natalie, Miguelangel Cuenca, Hoces, Daniel, Wolf-Dietrich Hardt, Sunagawa, Shinichi

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Additional file 2 of High throughput sequencing provides exact genomic locations of inducible prophages and accurate phage-to-host ratios in gut microbial strains von Zünd, Mirjam, Hans-Joachim Ruscheweyh, Field, Christopher M., Meyer, Natalie, Miguelangel Cuenca, Hoces, Daniel, Wolf-Dietrich Hardt, Sunagawa, Shinichi

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Additional file 4 of High throughput sequencing provides exact genomic locations of inducible prophages and accurate phage-to-host ratios in gut microbial strains von Zünd, Mirjam, Hans-Joachim Ruscheweyh, Field, Christopher M., Meyer, Natalie, Miguelangel Cuenca, Hoces, Daniel, Wolf-Dietrich Hardt, Sunagawa, Shinichi

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