Detecting T cell receptors involved in immune responses from single repertoire snapshots von Pogorelyy, Mikhail V, Minervina, Anastasia A, Shugay, Mikhail, Chudakov, Dmitriy M, Lebedev, Yuri B, Mora, Thierry, Walczak, Aleksandra M

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Longitudinal high-throughput TCR repertoire profiling reveals the dynamics of T-cell memory formation after mild COVID-19 infection von Minervina, Anastasia A, Komech, Ekaterina A, Titov, Aleksei, Bensouda Koraichi, Meriem, Rosati, Elisa, Mamedov, Ilgar Z, Franke, Andre, Efimov, Grigory A, Chudakov, Dmitriy M, Mora, Thierry, Walczak, Aleksandra M, Lebedev, Yuri B, Pogorelyy, Mikhail V

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Primary and secondary anti-viral response captured by the dynamics and phenotype of individual T cell clones von Minervina, Anastasia A, Pogorelyy, Mikhail V, Komech, Ekaterina A, Karnaukhov, Vadim K, Bacher, Petra, Rosati, Elisa, Franke, Andre, Chudakov, Dmitriy M, Mamedov, Ilgar Z, Lebedev, Yuri B, Mora, Thierry, Walczak, Aleksandra M

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Distinctive properties of identical twins' TCR repertoires revealed by high-throughput sequencing von Zvyagin, Ivan V., Pogorelyy, Mikhail V., Ivanova, Marina E., Komech, Ekaterina A., Shugay, Mikhail, Bolotin, Dmitry A., Shelenkov, Andrey A., Kurnosov, Alexey A., Staroverov, Dmitriy B., Chudakov, Dmitriy M., Lebedev, Yuri B., Mamedov, Ilgar Z.

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Method for identification of condition-associated public antigen receptor sequences von Pogorelyy, Mikhail V, Minervina, Anastasia A, Chudakov, Dmitriy M, Mamedov, Ilgar Z, Lebedev, Yuri B, Mora, Thierry, Walczak, Aleksandra M

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The use of non-functional clonotypes as a natural calibrator for quantitative bias correction in adaptive immune receptor repertoire profiling von Smirnova, Anastasia O, Miroshnichenkova, Anna M, Olshanskaya, Yulia V, Maschan, Michael A, Lebedev, Yuri B, Chudakov, Dmitriy M, Mamedov, Ilgar Z, Komkov, Alexander

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Inactivated tick-borne encephalitis vaccine elicits several overlapping waves of T cell response von Sycheva, Anastasiia L, Komech, Ekaterina A, Pogorelyy, Mikhail V, Minervina, Anastasia A, Urazbakhtin, Shamil Z, Salnikova, Maria A, Vorovitch, Mikhail F, Kopantzev, Eugene P, Zvyagin, Ivan V, Komkov, Alexander Y, Mamedov, Ilgar Z, Lebedev, Yuri B

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Novel bimodal TRBD1-TRBD2 rearrangements with dual or absent D-region contribute to TRB V-(D)-J combinatorial diversity von Smirnova, Anastasia O., Miroshnichenkova, Anna M., Belyaeva, Laima D., Kelmanson, Ilya V., Lebedev, Yuri B., Mamedov, Ilgar Z., Chudakov, Dmitriy M., Komkov, Alexander Y.

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The evidence for increased L1 activity in the site of human adult brain neurogenesis von Kurnosov, Alexey A, Ustyugova, Svetlana V, Nazarov, Vadim I, Minervina, Anastasia A, Komkov, Alexander Yu, Shugay, Mikhail, Pogorelyy, Mikhail V, Khodosevich, Konstantin V, Mamedov, Ilgar Z, Lebedev, Yuri B

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SeqURE - a new copy-capture based method for sequencing of unknown Retroposition events von Komkov, Alexander Y, Urazbakhtin, Shamil Z, Saliutina, Maria V, Komech, Ekaterina A, Shelygin, Yuri A, Nugmanov, Gaiaz A, Shubin, Vitaliy P, Smirnova, Anastasia O, Bobrov, Mikhail Y, Tsukanov, Alexey S, Snezhkina, Anastasia V, Kudryavtseva, Anna V, Lebedev, Yuri B, Mamedov, Ilgar Z

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Precise tracking of vaccine-responding T cell clones reveals convergent and personalized response in identical twins von Pogorelyy, Mikhail V., Minervina, Anastasia A., Touzel, Maximilian Puelma, Sycheva, Anastasiia L., Komech, Ekaterina A., Kovalenko, Elena I., Karganova, Galina G., Egorov, Evgeniy S., Komkov, Alexander Yu, Chudakov, Dmitriy M., Mamedov, Ilgar Z., Mora, Thierry, Walczak, Aleksandra M., Lebedev, Yuri B.

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An advanced enrichment method for rare somatic retroelement insertions sequencing von Komkov, Alexander Y, Minervina, Anastasia A, Nugmanov, Gaiaz A, Saliutina, Mariia V, Khodosevich, Konstantin V, Lebedev, Yuri B, Mamedov, Ilgar Z

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Mother and child T cell receptor repertoires: deep profiling study von Putintseva, Ekaterina V, Britanova, Olga V, Staroverov, Dmitriy B, Merzlyak, Ekaterina M, Turchaninova, Maria A, Shugay, Mikhail, Bolotin, Dmitriy A, Pogorelyy, Mikhail V, Mamedov, Ilgar Z, Bobrynina, Vlasta, Maschan, Mikhail, Lebedev, Yuri B, Chudakov, Dmitriy M

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Quantitative profiling reveals minor changes of T cell receptor repertoire in response to subunit inactivated influenza vaccine von Sycheva, Anastasiia L., Pogorelyy, Mikhail V., Komech, Ekaterina A., Minervina, Anastasia A., Zvyagin, Ivan V., Staroverov, Dmitriy B., Chudakov, Dmitriy M., Lebedev, Yuri B., Mamedov, Ilgar Z.

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Identification of Disease-associated Traits and Clonotypes in the T Cell Receptor Repertoire of Monozygotic Twins Affected by Inflammatory Bowel Diseases von Rosati, Elisa, Pogorelyy, Mikhail V, Dowds, C Marie, Moller, Frederik T, Sorensen, Signe B, Lebedev, Yuri B, Frey, Norbert, Schreiber, Stefan, Spehlmann, Martina E, Andersen, Vibeke, Mamedov, Ilgar Z, Franke, Andre

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Identification of Disease-associated Traits and Clonotypes in the T Cell Receptor Repertoire of Monozygotic Twins Affected by Inflammatory Bowel Diseases von Rosati, Elisa, Pogorelyy, Mikhail V, Dowds, C Marie, Moller, Frederik T, Sorensen, Signe B, Lebedev, Yuri B, Frey, Norbert, Schreiber, Stefan, Spehlmann, Martina E, Andersen, Vibeke, Mamedov, Ilgar Z, Franke, Andre

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Quantitative tracking of T cell clones after haematopoietic stem cell transplantation von Mamedov, Ilgar Z., Britanova, Olga V., Bolotin, Dmitriy A., Chkalina, Anna V., Staroverov, Dmitriy B., Zvyagin, Ivan V., Kotlobay, Alexey A., Turchaninova, Maria A., Fedorenko, Denis A., Novik, Andrew A., Sharonov, George V., Lukyanov, Sergey, Chudakov, Dmitriy M., Lebedev, Yuri B.

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Long terminal repeats of human endogenous retrovirus K family (HERV-K) specifically bind host cell nuclear proteins von Akopov, Sergey B, Nikolaev, Lev G, Khil, Pavel P, Lebedev, Yuri B, Sverdlov, Eugene D

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Cell line fingerprinting using retroelement insertion polymorphism von Ustyugova, Svetlana V, Amosova, Anna L, Lebedev, Yuri B, Sverdlov, Eugene D

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Unusually long target site duplications flanking some of the long terminal repeats of human endogenous retrovirus K in the human genome von Mamedov, Ilgar Z, Lebedev, Yuri B, Sverdlov, Eugene D

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