The ProteomeXchange consortium at 10 years: 2023 update von Deutsch, Eric W, Bandeira, Nuno, Perez-Riverol, Yasset, Sharma, Vagisha, Carver, Jeremy J, Mendoza, Luis, Kundu, Deepti J, Wang, Shengbo, Bandla, Chakradhar, Kamatchinathan, Selvakumar, Hewapathirana, Suresh, Pullman, Benjamin S, Wertz, Julie, Sun, Zhi, Kawano, Shin, Okuda, Shujiro, Watanabe, Yu, MacLean, Brendan, MacCoss, Michael J, Zhu, Yunping, Ishihama, Yasushi, Vizcaíno, Juan Antonio

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The ProteomeXchange consortium in 2020: enabling ‘big data’ approaches in proteomics von Deutsch, Eric W, Bandeira, Nuno, Sharma, Vagisha, Perez-Riverol, Yasset, Carver, Jeremy J, Kundu, Deepti J, García-Seisdedos, David, Jarnuczak, Andrew F, Hewapathirana, Suresh, Pullman, Benjamin S, Wertz, Julie, Sun, Zhi, Kawano, Shin, Okuda, Shujiro, Watanabe, Yu, Hermjakob, Henning, MacLean, Brendan, MacCoss, Michael J, Zhu, Yunping, Ishihama, Yasushi, Vizcaíno, Juan A

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MoGCN: A Multi-Omics Integration Method Based on Graph Convolutional Network for Cancer Subtype Analysis von Li, Xiao, Ma, Jie, Leng, Ling, Han, Mingfei, Li, Mansheng, He, Fuchu, Zhu, Yunping

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Extraction, structural and functional properties of Haematococcus pluvialis protein after pigment removal von Zhu, Yunping, Zhao, Xiaoyan, Zhang, Xiaowei, Liu, Hongkai

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AP3: An Advanced Proteotypic Peptide Predictor for Targeted Proteomics by Incorporating Peptide Digestibility von Gao, Zhiqiang, Chang, Cheng, Yang, Jinghan, Zhu, Yunping, Fu, Yan

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Amino acid, structure and antioxidant properties of Haematococcus pluvialis protein hydrolysates produced by different proteases von Zhu, Yunping, Zhao, Xiaoyan, Zhang, Xiaowei, Liu, Hongkai, Ao, Qiang

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DeepRTAlign: toward accurate retention time alignment for large cohort mass spectrometry data analysis von Liu, Yi, Yang, Yun, Chen, Wendong, Shen, Feng, Xie, Linhai, Zhang, Yingying, Zhai, Yuanjun, He, Fuchu, Zhu, Yunping, Chang, Cheng

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Spatially resolved proteomic map shows that extracellular matrix regulates epidermal growth von Li, Jun, Ma, Jie, Zhang, Qiyu, Gong, Huizi, Gao, Dunqin, Wang, Yujie, Li, Biyou, Li, Xiao, Zheng, Heyi, Wu, Zhihong, Zhu, Yunping, Leng, Ling

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Universal Spectrum Identifier for mass spectra von Deutsch, Eric W., Perez-Riverol, Yasset, Carver, Jeremy, Kawano, Shin, Mendoza, Luis, Van Den Bossche, Tim, Gabriels, Ralf, Binz, Pierre-Alain, Pullman, Benjamin, Sun, Zhi, Shofstahl, Jim, Bittremieux, Wout, Mak, Tytus D., Klein, Joshua, Zhu, Yunping, Lam, Henry, Vizcaíno, Juan Antonio, Bandeira, Nuno

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Enzyme-assisted extraction of astaxanthin from Haematococcus pluvialis and its stability and antioxidant activity von Zhao, Xiaoyan, Zhang, Xiaowei, Liu, Hongkai, Zhu, Haitao, Zhu, Yunping

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The protein-protein interaction ontology: for better representing and capturing the biological context of protein interaction von Li, Mansheng, He, Qiang, Yang, Chunyuan, Ma, Jie, He, Fuchu, Chen, Tao, Zhu, Yunping

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In-depth serum proteomics reveals biomarkers of psoriasis severity and response to traditional Chinese medicine von Xu, Meng, Deng, Jingwen, Xu, Kaikun, Zhu, Tiansheng, Han, Ling, Yan, Yuhong, Yao, Danni, Deng, Hao, Wang, Dan, Sun, Yaoting, Chang, Cheng, Zhang, Xiaomei, Dai, Jiayu, Yue, Liang, Zhang, Qiushi, Cai, Xue, Zhu, Yi, Duan, Hu, Liu, Yuan, Li, Dong, Zhu, Yunping, Radstake, Timothy R D J, Balak, Deepak M W, Xu, Danke, Guo, Tiannan, Lu, Chuanjian, Yu, Xiaobo

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ACP-DRL: an anticancer peptides recognition method based on deep representation learning von Xu, Xiaofang, Li, Chaoran, Yuan, Xinpu, Zhang, Qiangjian, Liu, Yi, Zhu, Yunping, Chen, Tao

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Research Progress of α-Glucosidase Inhibitors Produced by Microorganisms and Their Applications von Ren, Fei, Ji, Nairu, Zhu, Yunping

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Proteomics Standards Initiative at Twenty Years: Current Activities and Future Work von Deutsch, Eric W., Vizcaíno, Juan Antonio, Jones, Andrew R., Binz, Pierre-Alain, Lam, Henry, Klein, Joshua, Bittremieux, Wout, Perez-Riverol, Yasset, Tabb, David L., Walzer, Mathias, Ricard-Blum, Sylvie, Hermjakob, Henning, Neumann, Steffen, Mak, Tytus D., Kawano, Shin, Mendoza, Luis, Van Den Bossche, Tim, Gabriels, Ralf, Bandeira, Nuno, Carver, Jeremy, Pullman, Benjamin, Sun, Zhi, Hoffmann, Nils, Shofstahl, Jim, Zhu, Yunping, Licata, Luana, Quaglia, Federica, Tosatto, Silvio C. E., Orchard, Sandra E.

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LexA, an SOS response repressor, activates TGase synthesis in Streptomyces mobaraensis von Shi, Xinyu, Yan, Hao, Yuan, Fang, Li, Guoying, Liu, Jingfang, Li, Chunli, Yu, Xiaobin, Li, Zilong, Zhu, Yunping, Wang, Weishan

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Dynamic atlas of immune cells reveals multiple functional features of macrophages associated with progression of pulmonary fibrosis von Lv, Jiaoyan, Gao, Haoxiang, Ma, Jie, Liu, Jiachen, Tian, Yujie, Yang, Chunyuan, Li, Mansheng, Zhao, Yue, Li, Zhimin, Zhang, Xuegong, Zhu, Yunping, Zhang, Jianhong, Wu, Li

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In-depth method assessments of differentially expressed protein detection for shotgun proteomics data with missing values von Wang, Jinxia, Li, Liwei, Chen, Tao, Ma, Jie, Zhu, Yunping, Zhuang, Jujuan, Chang, Cheng

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Integrated analysis of circulating and tissue proteomes reveals that fibronectin 1 is a potential biomarker in papillary thyroid cancer von Ye, Guochao, Zhang, Xiaomei, Li, Mansheng, Lin, Zixiang, Xu, Yongcan, Dong, Haoru, Zhou, Jie, Zhang, Jiaqi, Wang, Sheng, Zhu, Yunping, Yu, Xiaobo, Qian, Xu

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Protocol for identifying and comparing molecular prognosis subtypes of IgAN using R von Wang, Juan, Liu, Yi, Chen, Xizhao, Li, Mansheng, Zhu, Yunping

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