Ligand-Specific c-Fos Expression Emerges from the Spatiotemporal Control of ErbB Network Dynamics von Nakakuki, Takashi, Birtwistle, Marc R., Saeki, Yuko, Yumoto, Noriko, Ide, Kaori, Nagashima, Takeshi, Brusch, Lutz, Ogunnaike, Babatunde A., Okada-Hatakeyama, Mariko, Kholodenko, Boris N.

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The Number of Transcription Factors at an Enhancer Determines Switch-like Gene Expression von Michida, Hiroki, Imoto, Hiroaki, Shinohara, Hisaaki, Yumoto, Noriko, Seki, Masahide, Umeda, Mana, Hayashi, Tetsutaro, Nikaido, Itoshi, Kasukawa, Takeya, Suzuki, Yutaka, Okada-Hatakeyama, Mariko

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Enhanced transcriptional heterogeneity mediated by NF-κB super-enhancers von Wibisana, Johannes N, Inaba, Takehiko, Shinohara, Hisaaki, Yumoto, Noriko, Hayashi, Tetsutaro, Umeda, Mana, Ebisawa, Masashi, Nikaido, Itoshi, Sako, Yasushi, Okada, Mariko

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Granzyme A Stimulates pDCs to Promote Adaptive Immunity via Induction of Type I IFN von Shimizu, Kanako, Yamasaki, Satoru, Sakurai, Maki, Yumoto, Noriko, Ikeda, Mariko, Mishima-Tsumagari, Chiemi, Kukimoto-Niino, Mutsuko, Watanabe, Takashi, Kawamura, Masami, Shirouzu, Mikako, Fujii, Shin-Ichiro

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Quantitative Transcriptional Control of ErbB Receptor Signaling Undergoes Graded to Biphasic Response for Cell Differentiation von Nagashima, Takeshi, Shimodaira, Hidetoshi, Ide, Kaori, Nakakuki, Takashi, Tani, Yukitaka, Takahashi, Kaoru, Yumoto, Noriko, Hatakeyama, Mariko

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Ligand-dependent responses of the ErbB signaling network: experimental and modeling analyses von Kholodenko, Boris N, Birtwistle, Marc R, Hatakeyama, Mariko, Yumoto, Noriko, Ogunnaike, Babatunde A, Hoek, Jan B

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Transcriptionally inducible Pleckstrin homology-like domain, family A, member 1, attenuates ErbB receptor activity by inhibiting receptor oligomerization von Magi, Shigeyuki, Iwamoto, Kazunari, Yumoto, Noriko, Hiroshima, Michio, Nagashima, Takeshi, Ohki, Rieko, Garcia-Munoz, Amaya, Volinsky, Natalia, Von Kriegsheim, Alexander, Sako, Yasushi, Takahashi, Koichi, Kimura, Shuhei, Kholodenko, Boris N., Okada-Hatakeyama, Mariko

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Ligand-specific sequential regulation of transcription factors for differentiation of MCF-7 cells von Saeki, Yuko, Endo, Takaho, Ide, Kaori, Nagashima, Takeshi, Yumoto, Noriko, Toyoda, Tetsuro, Suzuki, Harukazu, Hayashizaki, Yoshihide, Sakaki, Yoshiyuki, Okada-Hatakeyama, Mariko

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Integrated Quantitative Analysis of the Phosphoproteome and Transcriptome in Tamoxifen-resistant Breast Cancer von Oyama, Masaaki, Nagashima, Takeshi, Suzuki, Takashi, Kozuka-Hata, Hiroko, Yumoto, Noriko, Shiraishi, Yuichi, Ikeda, Kazuhiro, Kuroki, Yoko, Gotoh, Noriko, Ishida, Takanori, Inoue, Satoshi, Kitano, Hiroaki, Okada-Hatakeyama, Mariko

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Feedforward regulation of mRNA stability by prolonged extracellular signal‐regulated kinase activity von Nagashima, Takeshi, Inoue, Norihiko, Yumoto, Noriko, Saeki, Yuko, Magi, Shigeyuki, Volinsky, Natalia, Sorkin, Alexander, Kholodenko, Boris N., Okada‐Hatakeyama, Mariko

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Topological analysis of MAPK cascade for kinetic ErbB signaling von Nakakuki, Takashi, Yumoto, Noriko, Naka, Takashi, Shirouzu, Mikako, Yokoyama, Shigeyuki, Hatakeyama, Mariko

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An integrated expression atlas of miRNAs and their promoters in human and mouse von de Rie, Derek, Abugessaisa, Imad, Alam, Tanvir, Arner, Erik, Arner, Peter, Ashoor, Haitham, Åström, Gaby, Babina, Magda, Bertin, Nicolas, Burroughs, A Maxwell, Carlisle, Ailsa J, Daub, Carsten O, Detmar, Michael, Deviatiiarov, Ruslan, Fort, Alexandre, Gebhard, Claudia, Goldowitz, Daniel, Guhl, Sven, Ha, Thomas J, Harshbarger, Jayson, Hasegawa, Akira, Hashimoto, Kosuke, Herlyn, Meenhard, Heutink, Peter, Hitchens, Kelly J, Hon, Chung Chau, Huang, Edward, Ishizu, Yuri, Kai, Chieko, Kasukawa, Takeya, Klinken, Peter, Lassmann, Timo, Lecellier, Charles-Henri, Lee, Weonju, Lizio, Marina, Makeev, Vsevolod, Mathelier, Anthony, Medvedeva, Yulia A, Mejhert, Niklas, Mungall, Christopher J, Noma, Shohei, Ohshima, Mitsuhiro, Okada-Hatakeyama, Mariko, Persson, Helena, Rizzu, Patrizia, Roudnicky, Filip, Sætrom, Pål, Sato, Hiroki, Severin, Jessica, Shin, Jay W, Swoboda, Rolf K, Tarui, Hiroshi, Toyoda, Hiroo, Vitting-Seerup, Kristoffer, Winteringham, Louise, Yamaguchi, Yoko, Yasuzawa, Kayoko, Yoneda, Misako, Yumoto, Noriko, Zabierowski, Susan, Zhang, Peter G, Wells, Christine A, Summers, Kim M, Kawaji, Hideya, Sandelin, Albin, Rehli, Michael, Hayashizaki, Yoshihide, Carninci, Piero, Forrest, Alistair R R, de Hoon, Michiel J L

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Reconstruction of Sjögren's syndrome-like sialadenitis by a defined disease specific gut-reactive single TCR and an autoantibody von Iizuka-Koga, Mana, Ito, Minako, Yumoto, Noriko, Mise-Omata, Setsuko, Hayakawa, Taeko, Komai, Kyoko, Chikuma, Shunsuke, Takahashi, Satoru, Matsumoto, Isao, Sumida, Takayuki, Yoshimura, Akihiko

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Positive Feedback Within a Kinase Signaling Complex Functions as a Switch Mechanism for NF-κB Activation von Shinohara, Hisaaki, Behar, Marcelo, Inoue, Kentaro, Hiroshima, Michio, Yasuda, Tomoharu, Nagashima, Takeshi, Kimura, Shuhei, Sanjo, Hideki, Maeda, Shiori, Yumoto, Noriko, Ki, Sewon, Akira, Shizuo, Sako, Yasushi, Hoffmann, Alexander, Kurosaki, Tomohiro, Okada-Hatakeyama, Mariko

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Integrative genome-wide expression analysis bears evidence of estrogen receptor-independent transcription in heregulin-stimulated MCF-7 cells von Nagashima, Takeshi, Suzuki, Takahiro, Kondo, Shinji, Kuroki, Yoko, Takahashi, Kaoru, Ide, Kaori, Yumoto, Noriko, Hasegawa, Aki, Toyoda, Tetsuro, Kojima, Toshio, Konagaya, Akihiko, Suzuki, Harukazu, Hayashizaki, Yoshihide, Sakaki, Yoshiyuki, Hatakeyama, Mariko

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Phosphoproteome and Transcriptome Analyses of ErbB Ligand-stimulated MCF-7 Cells von Nagashima, Takeshi, Oyama, Masaaki, Kozuka-Hata, Hiroko, Yumoto, Noriko, Sakaki, Yoshiyuki, Hatakeyama, Mariko

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Stimulus-Dependent Inhibitor of Apoptosis Protein Expression Prolongs the Duration of B Cell Signalling von Shinohara, Hisaaki, Inoue, Kentaro, Yumoto, Noriko, Nagashima, Takeshi, Okada-Hatakeyama, Mariko

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Quantitative transcriptional control of ErbB receptor signaling undergoes graded to biphasic response for cell differentiation von Nagashima, Takeshi, Shimodaira, Hidetoshi, Ide, Kaori, Nakakuki, Takashi, Tani, Yukitaka, Takahashi, Kaoru, Yumoto, Noriko, Hatakeyama, Mariko

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A computational model on the modulation of mitogen-activated protein kinase (MAPK) and Akt pathways in heregulin-induced ErbB signalling von Hatakeyama, Mariko, Kimura, Shuhei, Naka, Takashi, Kawasaki, Takuji, Yumoto, Noriko, Ichikawa, Mio, Kim, Jae-Hoon, Saito, Kazuki, Saeki, Mihoro, Shirouzu, Mikako, Yokoyama, Shigeyuki, Konagaya, Akihiko

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Oscillation dynamics underlie functional switching of NF-κB for B-cell activation von Inoue, Kentaro, Shinohara, Hisaaki, Behar, Marcelo, Yumoto, Noriko, Tanaka, Gouhei, Hoffmann, Alexander, Aihara, Kazuyuki, Okada-Hatakeyama, Mariko

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