gVolante for standardizing completeness assessment of genome and transcriptome assemblies von Nishimura, Osamu, Hara, Yuichiro, Kuraku, Shigehiro

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The impact of local genomic properties on the evolutionary fate of genes von Hara, Yuichiro, Kuraku, Shigehiro

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Astrocytic phagocytosis is a compensatory mechanism for microglial dysfunction von Konishi, Hiroyuki, Okamoto, Takayuki, Hara, Yuichiro, Komine, Okiru, Tamada, Hiromi, Maeda, Mitsuyo, Osako, Fumika, Kobayashi, Masaaki, Nishiyama, Akira, Kataoka, Yosky, Takai, Toshiyuki, Udagawa, Nobuyuki, Jung, Steffen, Ozato, Keiko, Tamura, Tomohiko, Tsuda, Makoto, Yamanaka, Koji, Ogi, Tomoo, Sato, Katsuaki, Kiyama, Hiroshi

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Early vertebrate origin of CTCFL, a CTCF paralog, revealed by proximity-guided shark genome scaffolding von Kadota, Mitsutaka, Yamaguchi, Kazuaki, Hara, Yuichiro, Kuraku, Shigehiro

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Microglial gene signature reveals loss of homeostatic microglia associated with neurodegeneration of Alzheimer's disease von Sobue, Akira, Komine, Okiru, Hara, Yuichiro, Endo, Fumito, Mizoguchi, Hiroyuki, Watanabe, Seiji, Murayama, Shigeo, Saito, Takashi, Saido, Takaomi C, Sahara, Naruhiko, Higuchi, Makoto, Ogi, Tomoo, Yamanaka, Koji

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Extremotolerant tardigrade genome and improved radiotolerance of human cultured cells by tardigrade-unique protein von Hashimoto, Takuma, Horikawa, Daiki D., Saito, Yuki, Kuwahara, Hirokazu, Kozuka-Hata, Hiroko, Shin-I, Tadasu, Minakuchi, Yohei, Ohishi, Kazuko, Motoyama, Ayuko, Aizu, Tomoyuki, Enomoto, Atsushi, Kondo, Koyuki, Tanaka, Sae, Hara, Yuichiro, Koshikawa, Shigeyuki, Sagara, Hiroshi, Miura, Toru, Yokobori, Shin-ichi, Miyagawa, Kiyoshi, Suzuki, Yutaka, Kubo, Takeo, Oyama, Masaaki, Kohara, Yuji, Fujiyama, Asao, Arakawa, Kazuharu, Katayama, Toshiaki, Toyoda, Atsushi, Kunieda, Takekazu

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Optimizing and benchmarking de novo transcriptome sequencing: from library preparation to assembly evaluation von Hara, Yuichiro, Tatsumi, Kaori, Yoshida, Michio, Kajikawa, Eriko, Kiyonari, Hiroshi, Kuraku, Shigehiro

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Madagascar ground gecko genome analysis characterizes asymmetric fates of duplicated genes von Hara, Yuichiro, Takeuchi, Miki, Kageyama, Yuka, Tatsumi, Kaori, Hibi, Masahiko, Kiyonari, Hiroshi, Kuraku, Shigehiro

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Parallel evolution of trehalose production machinery in anhydrobiotic animals via recurrent gene loss and horizontal transfer von Hara, Yuichiro, Shibahara, Reira, Kondo, Koyuki, Abe, Wataru, Kunieda, Takekazu

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CTCF binding landscape in jawless fish with reference to Hox cluster evolution von Kadota, Mitsutaka, Hara, Yuichiro, Tanaka, Kaori, Takagi, Wataru, Tanegashima, Chiharu, Nishimura, Osamu, Kuraku, Shigehiro

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Tempo and mode of genomic mutations unveil human evolutionary history von Hara, Yuichiro

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ELOF1 is a transcription-coupled DNA repair factor that directs RNA polymerase II ubiquitylation von van der Weegen, Yana, de Lint, Klaas, van den Heuvel, Diana, Nakazawa, Yuka, Mevissen, Tycho E. T., van Schie, Janne J. M., San Martin Alonso, Marta, Boer, Daphne E. C., González-Prieto, Román, Narayanan, Ishwarya V., Klaassen, Noud H. M., Wondergem, Annelotte P., Roohollahi, Khashayar, Dorsman, Josephine C., Hara, Yuichiro, Vertegaal, Alfred C. O., de Lange, Job, Walter, Johannes C., Noordermeer, Sylvie M., Ljungman, Mats, Ogi, Tomoo, Wolthuis, Rob M. F., Luijsterburg, Martijn S.

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Shark genomes provide insights into elasmobranch evolution and the origin of vertebrates von Hara, Yuichiro, Yamaguchi, Kazuaki, Onimaru, Koh, Kadota, Mitsutaka, Koyanagi, Mitsumasa, Keeley, Sean D., Tatsumi, Kaori, Tanaka, Kaori, Motone, Fumio, Kageyama, Yuka, Nozu, Ryo, Adachi, Noritaka, Nishimura, Osamu, Nakagawa, Reiko, Tanegashima, Chiharu, Kiyatake, Itsuki, Matsumoto, Rui, Murakumo, Kiyomi, Nishida, Kiyonori, Terakita, Akihisa, Kuratani, Shigeru, Sato, Keiichi, Hyodo, Susumu, Kuraku, Shigehiro

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The iodide transporter Slc26a7 impacts thyroid function more strongly than Slc26a4 in mice von Yamaguchi, Naoya, Suzuki, Atsushi, Yoshida, Aya, Tanaka, Tatsushi, Aoyama, Kohei, Oishi, Hisashi, Hara, Yuichiro, Ogi, Tomoo, Amano, Izuki, Kameo, Satomi, Koibuchi, Noriyuki, Shibata, Yasuhiro, Ugawa, Shinya, Mizuno, Haruo, Saitoh, Shinji

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Gene expression profiling of granule cells and Purkinje cells in the zebrafish cerebellum von Takeuchi, Miki, Yamaguchi, Shingo, Sakakibara, Yoshimasa, Hayashi, Takuto, Matsuda, Koji, Hara, Yuichiro, Tanegashima, Chiharu, Shimizu, Takashi, Kuraku, Shigehiro, Hibi, Masahiko

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Abundance of ultramicro inversions within local alignments between human and chimpanzee genomes von Hara, Yuichiro, Imanishi, Tadashi

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Genetic background variation impacts microglial heterogeneity and disease progression in amyotrophic lateral sclerosis model mice von Komine, Okiru, Ohnuma, Syuhei, Hinohara, Kunihiko, Hara, Yuichiro, Shimada, Mayuko, Akashi, Tomohiro, Watanabe, Seiji, Sobue, Akira, Kawade, Noe, Ogi, Tomoo, Yamanaka, Koji

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Inference of a genome-wide protein-coding gene set of the inshore hagfish Eptatretus burgeri [version 1; peer review: 2 approved with reservations] von Nishimura, Osamu, Yamaguchi, Kazuaki, Hara, Yuichiro, Tatsumi, Kaori, Smith, Jeramiah J, Kadota, Mitsutaka, Kuraku, Shigehiro

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Sister group relationship of turtles to the bird-crocodilian clade revealed by nuclear DNA-coded proteins von Iwabe, Naoyuki, Hara, Yuichiro, Kumazawa, Yoshinori, Shibamoto, Kaori, Saito, Yumi, Miyata, Takashi, Katoh, Kazutaka

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Nodal paralogues underlie distinct mechanisms for visceral left–right asymmetry in reptiles and mammals von Kajikawa, Eriko, Horo, Uzuki, Ide, Takahiro, Mizuno, Katsutoshi, Minegishi, Katsura, Hara, Yuichiro, Ikawa, Yayoi, Nishimura, Hiromi, Uchikawa, Masanori, Kiyonari, Hiroshi, Kuraku, Shigehiro, Hamada, Hiroshi

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