Deep generative modeling for single-cell transcriptomics von Lopez, Romain, Regier, Jeffrey, Cole, Michael B., Jordan, Michael I., Yosef, Nir

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Implications of the LHCb discovery of CP violation in charm decays von Dery, Avital, Nir, Yosef

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Interpretable factor models of single-cell RNA-seq via variational autoencoders von Svensson, Valentine, Gayoso, Adam, Yosef, Nir, Pachter, Lior

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FastProject: a tool for low-dimensional analysis of single-cell RNA-Seq data von DeTomaso, David, Yosef, Nir

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Joint probabilistic modeling of single-cell multi-omic data with totalVI von Gayoso, Adam, Steier, Zoë, Lopez, Romain, Regier, Jeffrey, Nazor, Kristopher L., Streets, Aaron, Yosef, Nir

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Mapping single-cell data to reference atlases by transfer learning von Lotfollahi, Mohammad, Naghipourfar, Mohsen, Luecken, Malte D., Khajavi, Matin, Büttner, Maren, Wagenstetter, Marco, Avsec, Žiga, Gayoso, Adam, Yosef, Nir, Interlandi, Marta, Rybakov, Sergei, Misharin, Alexander V., Theis, Fabian J.

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Simulating multiple faceted variability in single cell RNA sequencing von Zhang, Xiuwei, Xu, Chenling, Yosef, Nir

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C P violation from τ , t and b dimension-6 Yukawa couplings — interplay of baryogenesis, EDM and Higgs physics von Fuchs, Elina, Losada, Marta, Nir, Yosef, Viernik, Yehonatan

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Slingshot: cell lineage and pseudotime inference for single-cell transcriptomics von Street, Kelly, Risso, Davide, Fletcher, Russell B, Das, Diya, Ngai, John, Yosef, Nir, Purdom, Elizabeth, Dudoit, Sandrine

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Integrated single cell analysis of blood and cerebrospinal fluid leukocytes in multiple sclerosis von Schafflick, David, Xu, Chenling A., Hartlehnert, Maike, Cole, Michael, Schulte-Mecklenbeck, Andreas, Lautwein, Tobias, Wolbert, Jolien, Heming, Michael, Meuth, Sven G., Kuhlmann, Tanja, Gross, Catharina C., Wiendl, Heinz, Yosef, Nir, Meyer zu Horste, Gerd

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Lessons from ATLAS and CMS measurements of Higgs boson decays to second generation fermions von Nir, Yosef, Udhayashankar, Purvaash Panduranghan

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A Python library for probabilistic analysis of single-cell omics data von Gayoso, Adam, Lopez, Romain, Xing, Galen, Boyeau, Pierre, Valiollah Pour Amiri, Valeh, Hong, Justin, Wu, Katherine, Jayasuriya, Michael, Mehlman, Edouard, Langevin, Maxime, Liu, Yining, Samaran, Jules, Misrachi, Gabriel, Nazaret, Achille, Clivio, Oscar, Xu, Chenling, Ashuach, Tal, Gabitto, Mariano, Lotfollahi, Mohammad, Svensson, Valentine, da Veiga Beltrame, Eduardo, Kleshchevnikov, Vitalii, Talavera-López, Carlos, Pachter, Lior, Theis, Fabian J., Streets, Aaron, Jordan, Michael I., Regier, Jeffrey, Yosef, Nir

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Identification and Massively Parallel Characterization of Regulatory Elements Driving Neural Induction von Inoue, Fumitaka, Kreimer, Anat, Ashuach, Tal, Ahituv, Nadav, Yosef, Nir

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Probabilistic harmonization and annotation of single‐cell transcriptomics data with deep generative models von Xu, Chenling, Lopez, Romain, Mehlman, Edouard, Regier, Jeffrey, Jordan, Michael I, Yosef, Nir

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Enhancing scientific discoveries in molecular biology with deep generative models von Lopez, Romain, Gayoso, Adam, Yosef, Nir

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Neutrinoless double-beta decay with massive scalar emission von Blum, Kfir, Nir, Yosef, Shavit, Michal

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Writ large: Genomic dissection of the effect of cellular environment on immune response von Yosef, Nir, Regev, Aviv

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Functional interpretation of single cell similarity maps von DeTomaso, David, Jones, Matthew G., Subramaniam, Meena, Ashuach, Tal, Ye, Chun J., Yosef, Nir

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Flavor Physics Constraints for Physics Beyond the Standard Model von Isidori, Gino, Nir, Yosef, Perez, Gilad

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Probing scalar dark matter oscillations with neutrino oscillations von Losada, Marta, Nir, Yosef, Perez, Gilad, Shpilman, Yogev

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