A large-scale binding and functional map of human RNA-binding proteins von Van Nostrand, Eric L., Freese, Peter, Pratt, Gabriel A., Wang, Xiaofeng, Wei, Xintao, Xiao, Rui, Blue, Steven M., Chen, Jia-Yu, Cody, Neal A. L., Dominguez, Daniel, Olson, Sara, Sundararaman, Balaji, Zhan, Lijun, Bazile, Cassandra, Bouvrette, Louis Philip Benoit, Bergalet, Julie, Duff, Michael O., Garcia, Keri E., Gelboin-Burkhart, Chelsea, Hochman, Myles, Lambert, Nicole J., Li, Hairi, McGurk, Michael P., Nguyen, Thai B., Palden, Tsultrim, Rabano, Ines, Sathe, Shashank, Stanton, Rebecca, Su, Amanda, Wang, Ruth, Yee, Brian A., Zhou, Bing, Louie, Ashley L., Aigner, Stefan, Fu, Xiang-Dong, Lécuyer, Eric, Burge, Christopher B., Graveley, Brenton R., Yeo, Gene W.

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Short poly(A) tails are a conserved feature of highly expressed genes von Lima, Sarah Azoubel, Chipman, Laura B, Nicholson, Angela L, Chen, Ying-Hsin, Yee, Brian A, Yeo, Gene W, Coller, Jeff, Pasquinelli, Amy E

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Robust single-cell discovery of RNA targets of RNA-binding proteins and ribosomes von Brannan, Kristopher W., Chaim, Isaac A., Marina, Ryan J., Yee, Brian A., Kofman, Eric R., Lorenz, Daniel A., Jagannatha, Pratibha, Dong, Kevin D., Madrigal, Assael A., Underwood, Jason G., Yeo, Gene W.

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Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins von Van Nostrand, Eric L, Pratt, Gabriel A, Yee, Brian A, Wheeler, Emily C, Blue, Steven M, Mueller, Jasmine, Park, Samuel S, Garcia, Keri E, Gelboin-Burkhart, Chelsea, Nguyen, Thai B, Rabano, Ines, Stanton, Rebecca, Sundararaman, Balaji, Wang, Ruth, Fu, Xiang-Dong, Graveley, Brenton R, Yeo, Gene W

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RBP-Maps enables robust generation of splicing regulatory maps von Yee, Brian A, Pratt, Gabriel A, Graveley, Brenton R, Van Nostrand, Eric L, Yeo, Gene W

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High-sensitivity in situ capture of endogenous RNA-protein interactions in fixed cells and primary tissues von Liang, Qishan, Yu, Tao, Kofman, Eric, Jagannatha, Pratibha, Rhine, Kevin, Yee, Brian A., Corbett, Kevin D., Yeo, Gene W.

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Zmat3 Is a Key Splicing Regulator in the p53 Tumor Suppression Program von Bieging-Rolett, Kathryn T., Kaiser, Alyssa M., Morgens, David W., Boutelle, Anthony M., Seoane, Jose A., Van Nostrand, Eric L., Zhu, Changyu, Houlihan, Shauna L., Mello, Stephano S., Yee, Brian A., McClendon, Jacob, Pierce, Sarah E., Winters, Ian P., Wang, Mengxiong, Connolly, Andrew J., Lowe, Scott W., Curtis, Christina, Yeo, Gene W., Winslow, Monte M., Bassik, Michael C., Attardi, Laura D.

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Splicing factor SRSF1 deficiency in the liver triggers NASH-like pathology and cell death von Arif, Waqar, Mathur, Bhoomika, Saikali, Michael F., Chembazhi, Ullas V., Toohill, Katelyn, Song, You Jin, Hao, Qinyu, Karimi, Saman, Blue, Steven M., Yee, Brian A., Van Nostrand, Eric L., Bangru, Sushant, Guzman, Grace, Yeo, Gene W., Prasanth, Kannanganattu V., Anakk, Sayeepriyadarshini, Cummins, Carolyn L., Kalsotra, Auinash

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Evaluation of Engineered CRISPR-Cas-Mediated Systems for Site-Specific RNA Editing von Marina, Ryan J., Brannan, Kristopher W., Dong, Kevin D., Yee, Brian A., Yeo, Gene W.

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Crosstalk between CRISPR-Cas9 and the human transcriptome von Smargon, Aaron A., Madrigal, Assael A., Yee, Brian A., Dong, Kevin D., Mueller, Jasmine R., Yeo, Gene W.

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A super-enhancer-regulated RNA-binding protein cascade drives pancreatic cancer von Antal, Corina E., Oh, Tae Gyu, Aigner, Stefan, Luo, En-Ching, Yee, Brian A., Campos, Tania, Tiriac, Hervé, Rothamel, Katherine L., Cheng, Zhang, Jiao, Henry, Wang, Allen, Hah, Nasun, Lenkiewicz, Elizabeth, Lumibao, Jan C., Truitt, Morgan L., Estepa, Gabriela, Banayo, Ester, Bashi, Senada, Esparza, Edgar, Munoz, Ruben M., Diedrich, Jolene K., Sodir, Nicole M., Mueller, Jasmine R., Fraser, Cory R., Borazanci, Erkut, Propper, David, Von Hoff, Daniel D., Liddle, Christopher, Yu, Ruth T., Atkins, Annette R., Han, Haiyong, Lowy, Andrew M., Barrett, Michael T., Engle, Dannielle D., Evan, Gerard I., Yeo, Gene W., Downes, Michael, Evans, Ronald M.

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Autism-associated CHD8 controls reactive gliosis and neuroinflammation via remodeling chromatin in astrocytes von Megagiannis, Platon, Mei, Yuan, Yan, Rachel E., Yuan, Lin, Wilde, Jonathan J., Eckersberg, Hailey, Suresh, Rahul, Tan, Xinzhu, Chen, Hong, Farmer, W. Todd, Cha, Kuwook, Le, Phuong Uyen, Catoire, Helene, Rochefort, Daniel, Kwan, Tony, Yee, Brian A., Dion, Patrick, Krishnaswamy, Arjun, Cloutier, Jean-Francois, Stifani, Stefano, Petrecca, Kevin, Yeo, Gene W., Murai, Keith K., Feng, Guoping, Rouleau, Guy A., Ideker, Trey, Sanjana, Neville E., Zhou, Yang

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The C. elegans neural editome reveals an ADAR target mRNA required for proper chemotaxis von Deffit, Sarah N, Yee, Brian A, Manning, Aidan C, Rajendren, Suba, Vadlamani, Pranathi, Wheeler, Emily C, Domissy, Alain, Washburn, Michael C, Yeo, Gene W, Hundley, Heather A

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Identification of the global miR-130a targetome reveals a role for TBL1XR1 in hematopoietic stem cell self-renewal and t(8;21) AML von Krivdova, Gabriela, Voisin, Veronique, Schoof, Erwin M., Marhon, Sajid A., Murison, Alex, McLeod, Jessica L., Gabra, Martino M., Zeng, Andy G.X., Aigner, Stefan, Yee, Brian A., Shishkin, Alexander A., Van Nostrand, Eric L., Hermans, Karin G., Trotman-Grant, Aaron C., Mbong, Nathan, Kennedy, James A., Gan, Olga I., Wagenblast, Elvin, De Carvalho, Daniel D., Salmena, Leonardo, Minden, Mark D., Bader, Gary D., Yeo, Gene W., Dick, John E., Lechman, Eric R.

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Transcriptome regulation by PARP13 in basal and antiviral states in human cells von Busa, Veronica F., Ando, Yoshinari, Aigner, Stefan, Yee, Brian A., Yeo, Gene W., Leung, Anthony K.L.

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Protocol to process crosslinking and immunoprecipitation data into annotated binding sites von Xu, Shuhao, Nguyen, Grady G., Naritomi, Jack T., Kopalle, Hema M., Yee, Brian A., Rothamel, Katherine L., Boyle, Evan A., Yeo, Gene W.

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The Host-Microbiome Response to Hyperbaric Oxygen Therapy in Ulcerative Colitis Patients von Gonzalez, Carlos G., Mills, Robert H., Kordahi, Melissa C., Carrillo-Terrazas, Marvic, Secaira-Morocho, Henry, Widjaja, Christella E., Tsai, Matthew S., Mittal, Yash, Yee, Brian A., Vargas, Fernando, Weldon, Kelly, Gauglitz, Julia M., Delaroque, Clara, Sauceda, Consuelo, Rossitto, Leigh-Ana, Ackermann, Gail, Humphrey, Gregory, Swafford, Austin D., Siegel, Corey A., Buckey, Jay C., Raffals, Laura E., Sadler, Charlotte, Lindholm, Peter, Fisch, Kathleen M., Valaseck, Mark, Suriawinata, Arief, Yeo, Gene W., Ghosh, Pradipta, Chang, John T., Chu, Hiutung, Dorrestein, Pieter, Zhu, Qiyun, Chassaing, Benoit, Knight, Rob, Gonzalez, David J., Dulai, Parambir S.

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Inhibition of YTHDF2 triggers proteotoxic cell death in MYC-driven breast cancer von Einstein, Jaclyn M., Perelis, Mark, Chaim, Isaac A., Meena, Jitendra K., Nussbacher, Julia K., Tankka, Alexandra T., Yee, Brian A., Li, Heyuan, Madrigal, Assael A., Neill, Nicholas J., Shankar, Archana, Tyagi, Siddhartha, Westbrook, Thomas F., Yeo, Gene W.

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fSHAPE, fSHAPE-eCLIP, and SHAPE-eCLIP probe transcript regions that interact with specific proteins von Corley, Meredith, Flynn, Ryan A., Blue, Steven M., Yee, Brian A., Chang, Howard Y., Yeo, Gene W.

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Large-scale tethered function assays identify factors that regulate mRNA stability and translation von Luo, En-Ching, Nathanson, Jason L., Tan, Frederick E., Schwartz, Joshua L., Schmok, Jonathan C., Shankar, Archana, Markmiller, Sebastian, Yee, Brian A., Sathe, Shashank, Pratt, Gabriel A., Scaletta, Duy B., Ha, Yuanchi, Hill, David E., Aigner, Stefan, Yeo, Gene W.

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