Longitudinal profiling of respiratory and systemic immune responses reveals myeloid cell-driven lung inflammation in severe COVID-19 von Szabo, Peter A., Dogra, Pranay, Gray, Joshua I., Wells, Steven B., Connors, Thomas J., Weisberg, Stuart P., Krupska, Izabela, Matsumoto, Rei, Poon, Maya M.L., Idzikowski, Emma, Morris, Sinead E., Pasin, Chloé, Yates, Andrew J., Ku, Amy, Chait, Michael, Davis-Porada, Julia, Guo, Xinzheng V., Zhou, Jing, Steinle, Matthew, Mackay, Sean, Saqi, Anjali, Baldwin, Matthew R., Sims, Peter A., Farber, Donna L.

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Age is not just a number: Naive T cells increase their ability to persist in the circulation over time von Rane, Sanket, Hogan, Thea, Seddon, Benedict, Yates, Andrew J

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U.S. West Coast droughts and heat waves exacerbate pollution inequality and can evade emission control policies von Zeighami, Amir, Kern, Jordan, Yates, Andrew J., Weber, Paige, Bruno, August A.

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Healthy dynamics of CD4 T cells may drive HIV resurgence in perinatally-infected infants on antiretroviral therapy von Morris, Sinead E, Strehlau, Renate, Shiau, Stephanie, Abrams, Elaine J, Tiemessen, Caroline T, Kuhn, Louise, Yates, Andrew J

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Theories and quantification of thymic selection von Yates, Andrew J

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Asymmetric thymocyte death underlies the CD4:CD8 T-cell ratio in the adaptive immune system von Sinclair, Charles, Bains, Iren, Yates, Andrew J, Seddon, Benedict

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Towards a unified model of naive T cell dynamics across the lifespan von Rane, Sanket, Hogan, Thea, Lee, Edward, Seddon, Benedict, Yates, Andrew J

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Notch2 controls developmental fate choices between germinal center and marginal zone B cells upon immunization von Babushku, Tea, Lechner, Markus, Ehrenberg, Stefanie, Rambold, Ursula, Schmidt-Supprian, Marc, Yates, Andrew J., Rane, Sanket, Zimber-Strobl, Ursula, Strobl, Lothar J.

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Temporal fate mapping reveals age-linked heterogeneity in naive T lymphocytes in mice von Hogan, Thea, Gossel, Graeme, Yates, Andrew J., Seddon, Benedict

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The dynamics and longevity of circulating CD4+ memory T cells depend on cell age and not the chronological age of the host von Bullock, M Elise, Hogan, Thea, Williams, Cayman, Morris, Sinead, Nowicka, Maria, Sharjeel, Minahil, van Dorp, Christiaan, Yates, Andrew J, Seddon, Benedict

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Quantifying cellular dynamics in mice using a novel fluorescent division reporter system von Lukas, Eva, Hogan, Thea, Williams, Cayman, Seddon, Benedict, Yates, Andrew J

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Fate Mapping Quantifies the Dynamics of B Cell Development and Activation throughout Life von Verheijen, Melissa, Rane, Sanket, Pearson, Claire, Yates, Andrew J., Seddon, Benedict

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Quantification of lymph node transit times reveals differences in antigen surveillance strategies of naïve CD4⁺ and CD8⁺ T cells von Mandl, Judith N, Liou, Rachel, Klauschen, Frederick, Vrisekoop, Nienke, Monteiro, João P, Yates, Andrew J, Huang, Alex Y, Germain, Ronald N

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Virulence-transmission trade-offs and population divergence in virulence in a naturally occurring butterfly parasite von de Roode, Jacobus C, Yates, Andrew J, Altizer, Sonia

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Memory CD4 T cell subsets are kinetically heterogeneous and replenished from naive T cells at high levels von Gossel, Graeme, Hogan, Thea, Cownden, Daniel, Seddon, Benedict, Yates, Andrew J

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Peripheral selection rather than thymic involution explains sudden contraction in naive CD4 T-cell diversity with age von Johnson, Philip L. F., Yates, Andrew J., Goronzy, Jörg J., Antia, Rustom

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Modeling the measles paradox reveals the importance of cellular immunity in regulating viral clearance von Morris, Sinead E, Yates, Andrew J, de Swart, Rik L, de Vries, Rory D, Mina, Michael J, Nelson, Ashley N, Lin, Wen-Hsuan W, Kouyos, Roger D, Griffin, Diane E, Grenfell, Bryan T

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Identifying T Cell Receptors from High-Throughput Sequencing: Dealing with Promiscuity in TCRα and TCRβ Pairing von Lee, Edward S, Thomas, Paul G, Mold, Jeff E, Yates, Andrew J

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Variable selection methods for predicting clinical outcomes following allogeneic hematopoietic cell transplantation von Pasin, Chloé, Moy, Ryan H., Reshef, Ran, Yates, Andrew J.

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Expected Health Effects of Reduced Air Pollution from COVID-19 Social Distancing von Cicala, Steve, Holland, Stephen P., Mansur, Erin T., Muller, Nicholas Z., Yates, Andrew J.

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