DeepChrome: deep-learning for predicting gene expression from histone modifications von Singh, Ritambhara, Lanchantin, Jack, Robins, Gabriel, Qi, Yanjun

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Cas9-chromatin binding information enables more accurate CRISPR off-target prediction von Singh, Ritambhara, Kuscu, Cem, Quinlan, Aaron, Qi, Yanjun, Adli, Mazhar

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Opportunities and obstacles for deep learning in biology and medicine von Ching, Travers, Himmelstein, Daniel S., Beaulieu-Jones, Brett K., Kalinin, Alexandr A., Do, Brian T., Way, Gregory P., Ferrero, Enrico, Agapow, Paul-Michael, Zietz, Michael, Hoffman, Michael M., Xie, Wei, Rosen, Gail L., Lengerich, Benjamin J., Israeli, Johnny, Lanchantin, Jack, Woloszynek, Stephen, Carpenter, Anne E., Shrikumar, Avanti, Xu, Jinbo, Cofer, Evan M., Lavender, Christopher A., Turaga, Srinivas C., Alexandari, Amr M., Lu, Zhiyong, Harris, David J., DeCaprio, Dave, Qi, Yanjun, Kundaje, Anshul, Peng, Yifan, Wiley, Laura K., Segler, Marwin H. S., Boca, Simina M., Swamidass, S. Joshua, Huang, Austin, Gitter, Anthony, Greene, Casey S.

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DeepDiff: DEEP-learning for predicting DIFFerential gene expression from histone modifications von Sekhon, Arshdeep, Singh, Ritambhara, Qi, Yanjun

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Semi-supervised multi-task learning for predicting interactions between HIV-1 and human proteins von Qi, Yanjun, Tastan, Oznur, Carbonell, Jaime G., Klein-Seetharaman, Judith, Weston, Jason

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Evaluation of different biological data and computational classification methods for use in protein interaction prediction von Qi, Yanjun, Bar-Joseph, Ziv, Klein-Seetharaman, Judith

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A unified multitask architecture for predicting local protein properties von Qi, Yanjun, Oja, Merja, Weston, Jason, Noble, William Stafford

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Study on the Deformation and Failure Characteristics of the Long Composite Insulated Cold Transmission Pipe in Deep Mines von Wang, Wenlong, Yue, Fengtian, Wei, Jingsheng, Gao, Tao, Qi, Yanjun

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Protein complex identification by supervised graph local clustering von Qi, Yanjun, Balem, Fernanda, Faloutsos, Christos, Klein-Seetharaman, Judith, Bar-Joseph, Ziv

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Research on Damage Evolution Mechanism of Layered Rock Mass under Blasting Load von Xie, Lixiang, Zhang, Jiahao, Yang, Dongyu, Qi, Yanjun, Wu, Linjun, Chen, Hongyun

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Summertime Moisture Sources and Transportation Pathways for China and Associated Atmospheric Circulation Patterns von Zhang, Ruonan, Chu, QuCheng, Zuo, Zhiyan, Qi, Yanjun

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Effects of the atmospheric dynamic and thermodynamic fields on the eastward propagation of Tibetan Plateau vortices von Li, Lun, Zhang, Renhe, Wen, Min, Duan, Jianping, Qi, Yanjun

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Boreal summer quasi-monthly oscillation in the global tropics von BIN WANG, WEBSTER, Peter, KIKUCHI, Kazuyoshi, YASUNARI, Tetsuzo, YANJUN QI

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Influence of Weak Interlayer on the Mechanical Performance of the Bolted Rock Mass with a Single Free Surface in Deep Mining von Ding, Shuxue, Gao, Yuan, Jing, Hongwen, Shi, Xinshuai, Qi, Yanjun, Guo, Jiaqi

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The CAMS Climate System Model and a Basic Evaluation of Its Climatology and Climate Variability Simulation von Rong, Xinyao, Li, Jian, Chen, Haoming, Xin, Yufei, Su, Jingzhi, Hua, Lijuan, Zhou, Tianjun, Qi, Yanjun, Zhang, Zhengqiu, Zhang, Guo, Li, Jianduo

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Identification and Development of Therapeutics for COVID-19 von Rando, Halie M, Wellhausen, Nils, Ghosh, Soumita, Lee, Alexandra J, Dattoli, Anna Ada, Hu, Fengling, Byrd, James Brian, Rafizadeh, Diane N, Lordan, Ronan, Qi, Yanjun, Sun, Yuchen, Brueffer, Christian, Field, Jeffrey M, Ben Guebila, Marouen, Jadavji, Nafisa M, Skelly, Ashwin N, Ramsundar, Bharath, Wang, Jinhui, Goel, Rishi Raj, Park, YoSon, Boca, Simina M, Gitter, Anthony, Greene, Casey S

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Graph convolutional networks for epigenetic state prediction using both sequence and 3D genome data von Lanchantin, Jack, Qi, Yanjun

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Numerical Study on the Mechanism and Application of Artificial Free Surfaces in Bedrock Blasting of Shield Tunnels von Qi, Yanjun, Dou, Linming, Dong, Zhaoxing, Jiang, Zheng, Meng, Bo, Zhang, Junzhong

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Numerical Study on Failure Mechanisms of Shaft Wall Consisting of Steel Plate and Concrete under the Effects of Explosion von Qi, Yanjun, Dou, Linming, Dong, Zhaoxing, Meng, Bo

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Multi-timescale variability of tropical convection in the Indo-western Pacific Ocean von Qi, Yanjun, Zhong, Ting

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