PxBLAT: an efficient python binding library for BLAT von Li, Yangyang, Yang, Rendong

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Analyzing circadian expression data by harmonic regression based on autoregressive spectral estimation von Yang, Rendong, Su, Zhen

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Therapeutic targeting of BET bromodomain proteins in castration-resistant prostate cancer von Asangani, Irfan A., Dommeti, Vijaya L., Wang, Xiaoju, Malik, Rohit, Cieslik, Marcin, Yang, Rendong, Escara-Wilke, June, Wilder-Romans, Kari, Dhanireddy, Sudheer, Engelke, Carl, Iyer, Mathew K., Jing, Xiaojun, Wu, Yi-Mi, Cao, Xuhong, Qin, Zhaohui S., Wang, Shaomeng, Feng, Felix Y., Chinnaiyan, Arul M.

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The DNA methylation landscape of advanced prostate cancer von Zhao, Shuang G., Chen, William S., Li, Haolong, Foye, Adam, Zhang, Meng, Sjöström, Martin, Aggarwal, Rahul, Playdle, Denise, Liao, Arnold, Alumkal, Joshi J., Das, Rajdeep, Chou, Jonathan, Hua, Junjie T., Barnard, Travis J., Bailey, Adina M., Chow, Eric D., Perry, Marc D., Dang, Ha X., Yang, Rendong, Moussavi-Baygi, Ruhollah, Zhang, Li, Alshalalfa, Mohammed, Laura Chang, S., Houlahan, Kathleen E., Shiah, Yu-Jia, Beer, Tomasz M., Thomas, George, Chi, Kim N., Gleave, Martin, Zoubeidi, Amina, Reiter, Robert E., Rettig, Matthew B., Witte, Owen, Yvonne Kim, M., Fong, Lawrence, Spratt, Daniel E., Morgan, Todd M., Bose, Rohit, Huang, Franklin W., Li, Hui, Chesner, Lisa, Shenoy, Tanushree, Goodarzi, Hani, Asangani, Irfan A., Sandhu, Shahneen, Lang, Joshua M., Mahajan, Nupam P., Lara, Primo N., Evans, Christopher P., Febbo, Phillip, Batzoglou, Serafim, Knudsen, Karen E., He, Housheng H., Huang, Jiaoti, Zwart, Wilbert, Costello, Joseph F., Luo, Jianhua, Tomlins, Scott A., Wyatt, Alexander W., Dehm, Scott M., Ashworth, Alan, Gilbert, Luke A., Boutros, Paul C., Farh, Kyle, Chinnaiyan, Arul M., Maher, Christopher A., Small, Eric J., Quigley, David A., Feng, Felix Y.

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Targeting a Single Alternative Polyadenylation Site Coordinately Blocks Expression of Androgen Receptor mRNA Splice Variants in Prostate Cancer von Van Etten, Jamie L, Nyquist, Michael, Li, Yingming, Yang, Rendong, Ho, Yeung, Johnson, Rachel, Ondigi, Olivia, Voytas, Daniel F, Henzler, Christine, Dehm, Scott M

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Truncation and constitutive activation of the androgen receptor by diverse genomic rearrangements in prostate cancer von Henzler, Christine, Li, Yingming, Yang, Rendong, McBride, Terri, Ho, Yeung, Sprenger, Cynthia, Liu, Gang, Coleman, Ilsa, Lakely, Bryce, Li, Rui, Ma, Shihong, Landman, Sean R., Kumar, Vipin, Hwang, Tae Hyun, Raj, Ganesh V., Higano, Celestia S., Morrissey, Colm, Nelson, Peter S., Plymate, Stephen R., Dehm, Scott M.

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ASCL1-regulated DARPP-32 and t-DARPP stimulate small cell lung cancer growth and neuroendocrine tumour cell proliferation von Alam, Sk. Kayum, Wang, Li, Ren, Yanan, Hernandez, Christina E., Kosari, Farhad, Roden, Anja C., Yang, Rendong, Hoeppner, Luke H.

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Opposing transcriptional programs of KLF5 and AR emerge during therapy for advanced prostate cancer von Che, Meixia, Chaturvedi, Aashi, Munro, Sarah A., Pitzen, Samuel P., Ling, Alex, Zhang, Weijie, Mentzer, Josh, Ku, Sheng-Yu, Puca, Loredana, Zhu, Yanyun, Bergman, Andries M., Severson, Tesa M., Forster, Colleen, Liu, Yuzhen, Hildebrand, Jacob, Daniel, Mark, Wang, Ting-You, Selth, Luke A., Hickey, Theresa, Zoubeidi, Amina, Gleave, Martin, Bareja, Rohan, Sboner, Andrea, Tilley, Wayne, Carroll, Jason S., Tan, Winston, Kohli, Manish, Yang, Rendong, Hsieh, Andrew C., Murugan, Paari, Zwart, Wilbert, Beltran, Himisha, Huang, R. Stephanie, Dehm, Scott M.

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Androgen Receptor Variant AR-V9 Is Coexpressed with AR-V7 in Prostate Cancer Metastases and Predicts Abiraterone Resistance von Kohli, Manish, Ho, Yeung, Hillman, David W, Van Etten, Jamie L, Henzler, Christine, Yang, Rendong, Sperger, Jamie M, Li, Yingming, Tseng, Elizabeth, Hon, Ting, Clark, Tyson, Tan, Winston, Carlson, Rachel E, Wang, Liguo, Sicotte, Hugues, Thai, Ho, Jimenez, Rafael, Huang, Haojie, Vedell, Peter T, Eckloff, Bruce W, Quevedo, Jorge F, Pitot, Henry C, Costello, Brian A, Jen, Jin, Wieben, Eric D, Silverstein, Kevin A T, Lang, Joshua M, Wang, Liewei, Dehm, Scott M

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Indel detection from DNA and RNA sequencing data with transIndel von Yang, Rendong, Van Etten, Jamie L, Dehm, Scott M

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Diverse AR Gene Rearrangements Mediate Resistance to Androgen Receptor Inhibitors in Metastatic Prostate Cancer von Li, Yingming, Yang, Rendong, Henzler, Christine M., Ho, Yeung, Passow, Courtney, Auch, Benjamin, Carreira, Suzanne, Rodrigues, Daniel Nava, Bertan, Claudia, Tae Hyun Hwang, Quigley, David A., Dang, Ha X., Morrissey, Colm, Fraser, Michael, Plymate, Stephen R., Maher, Christopher A., Feng, Felix Y., de Bono, Johann S., Dehm, Scott M.

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Cerebellar Transcriptome Profiles of ATXN1 Transgenic Mice Reveal SCA1 Disease Progression and Protection Pathways von Ingram, Melissa, Wozniak, Emily A.L., Duvick, Lisa, Yang, Rendong, Bergmann, Paul, Carson, Robert, O’Callaghan, Brennon, Zoghbi, Huda Y., Henzler, Christine, Orr, Harry T.

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Radiation dermatitis in the hairless mouse model mimics human radiation dermatitis von Lawrence, Jessica, Seelig, Davis, Demos-Davies, Kimberly, Ferreira, Clara, Ren, Yanan, Wang, Li, Alam, Sk. Kayum, Yang, Rendong, Guedes, Alonso, Craig, Angela, Hoeppner, Luke H.

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Interleukin-15 Complex Treatment Protects Mice from Cerebral Malaria by Inducing Interleukin-10-Producing Natural Killer Cells von Burrack, Kristina S., Huggins, Matthew A., Taras, Emily, Dougherty, Philip, Henzler, Christine M., Yang, Rendong, Alter, Sarah, Jeng, Emily K., Wong, Hing C., Felices, Martin, Cichocki, Frank, Miller, Jeffrey S., Hart, Geoffrey T., Johnson, Aaron J., Jameson, Stephen C., Hamilton, Sara E.

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The central role of EED in the orchestration of polycomb group complexes von Cao, Qi, Wang, Xiaoju, Zhao, Meng, Yang, Rendong, Malik, Rohit, Qiao, Yuanyuan, Poliakov, Anton, Yocum, Anastasia K., Li, Yong, Chen, Wei, Cao, Xuhong, Jiang, Xia, Dahiya, Arun, Harris, Clair, Feng, Felix Y., Kalantry, Sundeep, Qin, Zhaohui S., Dhanasekaran, Saravana M., Chinnaiyan, Arul M.

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Identification of mutations that cooperate with defects in B cell transcription factors to initiate leukemia von Heltemes-Harris, Lynn M., Hubbard, Gregory K., LaRue, Rebecca S., Munro, Sarah A., Yang, Rendong, Henzler, Christine M., Starr, Timothy K., Sarver, Aaron L., Kornblau, Steven M., Farrar, Michael A.

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LncGSEA: a versatile tool to infer lncRNA associated pathways from large-scale cancer transcriptome sequencing data von Ren, Yanan, Wang, Ting-You, Anderton, Leah C., Cao, Qi, Yang, Rendong

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Antagonism of B cell enhancer networks by STAT5 drives leukemia and poor patient survival von Katerndahl, Casey D S, Heltemes-Harris, Lynn M, Willette, Mark J L, Henzler, Christine M, Frietze, Seth, Yang, Rendong, Schjerven, Hilde, Silverstein, Kevin A T, Ramsey, Laura B, Hubbard, Gregory, Wells, Andrew D, Kuiper, Roland P, Scheijen, Blanca, van Leeuwen, Frank N, Müschen, Markus, Kornblau, Steven M, Farrar, Michael A

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Targeting RET Kinase in Neuroendocrine Prostate Cancer von VanDeusen, Halena R., Ramroop, Johnny R., Morel, Katherine L., Bae, Song Yi, Sheahan, Anjali V., Sychev, Zoi, Lau, Nathan A., Cheng, Larry C., Tan, Victor M., Li, Zhen, Petersen, Ashley, Lee, John K., Park, Jung Wook, Yang, Rendong, Hwang, Justin H., Coleman, Ilsa, Witte, Owen N., Morrissey, Colm, Corey, Eva, Nelson, Peter S., Ellis, Leigh, Drake, Justin M.

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Integrated protocol for exitron and exitron-derived neoantigen identification using human RNA-seq data with ScanExitron and ScanNeo von Wang, Ting-You, Yang, Rendong

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