Identification and characterization of ovarian cancer-initiating cells from primary human tumors von Zhang, Shu, Balch, Curt, Chan, Michael W, Lai, Hung-Cheng, Matei, Daniela, Schilder, Jeanne M, Yan, Pearlly S, Huang, Tim H-M, Nephew, Kenneth P

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Diverse AR-V7 cistromes in castration-resistant prostate cancer are governed by HoxB13 von Chen, Zhong, Wu, Dayong, Thomas-Ahner, Jennifer M., Lu, Changxue, Zhao, Pei, Zhang, Qingfu, Geraghty, Connor, Yan, Pearlly S., Hankey, William, Sunkel, Benjamin, Cheng, Xiaolong, Antonarakis, Emmanuel S., Wang, Qi-En, Liu, Zhihua, Huang, Tim H.-M., Jin, Victor X., Clinton, Steven K., Luo, Jun, Huang, Jiaoti, Wang, Qianben

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Bacteria pathogens drive host colonic epithelial cell promoter hypermethylation of tumor suppressor genes in colorectal cancer von Xia, Xiaoxuan, Wu, William Ka Kei, Wong, Sunny Hei, Liu, Dabin, Kwong, Thomas Ngai Yeung, Nakatsu, Geicho, Yan, Pearlly S., Chuang, Yu-Ming, Chan, Michael Wing-Yan, Coker, Olabisi Oluwabukola, Chen, Zigui, Yeoh, Yun Kit, Zhao, Liuyang, Wang, Xiansong, Cheng, Wing Yin, Chan, Matthew Tak Vai, Chan, Paul Kay Sheung, Sung, Joseph Jao Yiu, Wang, Maggie Haitian, Yu, Jun

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Preclinical Investigation of the Novel Histone Deacetylase Inhibitor AR-42 in the Treatment of Cancer-Induced Cachexia von Tseng, Yu-Chou, Kulp, Samuel K, Lai, I-Lu, Hsu, En-Chi, He, Wei A, Frankhouser, David E, Yan, Pearlly S, Mo, Xiaokui, Bloomston, Mark, Lesinski, Gregory B, Marcucci, Guido, Guttridge, Denis C, Bekaii-Saab, Tanios, Chen, Ching-Shih

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Environmental Factor-Mediated Transgenerational Inheritance of Igf2r Hypomethylation and Pulmonary Allergic Response via Targeting Dendritic Cells von Suen, Jau-Ling, Wu, Tai-Ting, Li, Yue-Hyuan, Lee, Chin-Lai, Kuo, Fu-Chen, Yan, Pearlly S., Wu, Chia-Fang, Tran, Mita, Wang, Chien-Jen, Hung, Chih-Hsing, Wu, Ming-Tsang, Chan, Michael W. Y., Huang, Shau-Ku

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LINE-1 hypomethylation in cancer is highly variable and inversely correlated with microsatellite instability von Estécio, Marcos R H, Gharibyan, Vazganush, Shen, Lanlan, Ibrahim, Ashraf E K, Doshi, Ketan, He, Rong, Jelinek, Jaroslav, Yang, Allen S, Yan, Pearlly S, Huang, Tim H-M, Tajara, Eloiza H, Issa, Jean-Pierre J

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Tcl1 protein functions as an inhibitor of de novo DNA methylation in B-cell chronic lymphocytic leukemia (CLL) von Palamarchuk, Alexey, Yan, Pearlly S., Zanesi, Nicola, Wang, Linan, Rodrigues, Benjamin, Murphy, Mark, Balatti, Veronica, Bottoni, Arianna, Nazaryan, Natalya, Alder, Hansjuerg, Rassenti, Laura, Kipps, Thomas J., Freitas, Michael, Croce, Carlo M., Pekarsky, Yuri

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Mapping Geographic Zones of Cancer Risk with Epigenetic Biomarkers in Normal Breast Tissue von Yan, Pearlly S, Venkataramu, Chinnambally, Ibrahim, Ashraf, Liu, Joseph C, Shen, Rulong Z, Diaz, Nils M, Centeno, Barbara, Weber, Frank, Leu, Yu-Wei, Shapiro, Charles L, Eng, Charis, Yeatman, Timothy J, Huang, Tim H-M

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High-throughput methylation profiling by MCA coupled to CpG island microarray von Estécio, Marcos R H, Yan, Pearlly S, Ibrahim, Ashraf E K, Tellez, Carmen S, Shen, Lanlan, Huang, Tim H-M, Issa, Jean-Pierre J

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Amplification of Distant Estrogen Response Elements Deregulates Target Genes Associated with Tamoxifen Resistance in Breast Cancer von Hsu, Pei-Yin, Hsu, Hang-Kai, Lan, Xun, Juan, Liran, Yan, Pearlly S., Labanowska, Jadwiga, Heerema, Nyla, Hsiao, Tzu-Hung, Chiu, Yu-Chiao, Chen, Yidong, Liu, Yunlong, Li, Lang, Li, Rong, Thompson, Ian M., Nephew, Kenneth P., Sharp, Zelton D., Kirma, Nameer B., Jin, Victor X., Huang, Tim H.-M.

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Isolating human transcription factor targets by coupling chromatin immunoprecipitation and CpG island microarray analysis von Weinmann, Amy S, Yan, Pearlly S, Oberley, Matthew J, Huang, Tim Hui-Ming, Farnham, Peggy J

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Metabolic Regulation of Glycolysis and AMP Activated Protein Kinase Pathways during Black Raspberry-Mediated Oral Cancer Chemoprevention von Knobloch, Thomas J, Ryan, Nathan M, Bruschweiler-Li, Lei, Wang, Cheng, Bernier, Matthew C, Somogyi, Arpad, Yan, Pearlly S, Cooperstone, Jessica L, Mo, Xiaokui, Brüschweiler, Rafael P, Weghorst, Christopher M, Oghumu, Steve

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Estrogen-mediated epigenetic repression of large chromosomal regions through DNA looping von Hsu, Pei-Yin, Hsu, Hang-Kai, Singer, Gregory A C, Yan, Pearlly S, Rodriguez, Benjamin A T, Liu, Joseph C, Weng, Yu-I, Deatherage, Daniel E, Chen, Zhong, Pereira, Julia S, Lopez, Ricardo, Russo, Jose, Wang, Qianben, Lamartiniere, Coral A, Nephew, Kenneth P, Huang, Tim H-M

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Epigenetic Profiling of Cutaneous T-Cell Lymphoma: Promoter Hypermethylation of Multiple Tumor Suppressor Genes Including BCL7a, PTPRG, and p73 von VAN DOOM, Remco, ZOUTMAN, Willem H, HUANG, Tim H, TENSEN, Cornelis P, DIJKMAN, Remco, DE MENEZES, Renee X, COMMANDEUR, Suzan, MULDER, Aat A, VAN DER VELDEN, Pieter A, VERMEER, Maarten H, WILLEMZE, Rein, YAN, Pearily S

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FuSpot: a web-based tool for visual evaluation of fusion candidates von Killian, Jackson A, Topiwala, Taha M, Pelletier, Alex R, Frankhouser, David E, Yan, Pearlly S, Bundschuh, Ralf

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Epigenetic Downregulation of Mitogen-Activated Protein Kinase Phosphatase MKP-2 Relieves Its Growth Suppressive Activity in Glioma Cells von WAHA, Anke, FELSBERG, Jörg, WIESTLER, Otmar D, REIFENBERGER, Guido, PIETSCH, Torsten, WAHA, Andreas, HARTMANN, Wolfgang, VON DEM KNESEBECK, Anna, MIKESKA, Thomas, JOOS, Stefan, WOLTER, Marietta, KOCH, Arend, YAN, Pearlly S, ENDL, Elmar

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Methylation-specific oligonucleotide microarray: a new potential for high-throughput methylation analysis von Gitan, Raad S, Shi, Huidong, Chen, Chuan-Mu, Yan, Pearlly S, Huang, Tim Hui-Ming

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A new method for stranded whole transcriptome RNA-seq von Miller, David F.B., Yan, Pearlly S., Buechlein, Aaron, Rodriguez, Benjamin A., Yilmaz, Ayse S., Goel, Shokhi, Lin, Hai, Collins-Burow, Bridgette, Rhodes, Lyndsay V., Braun, Chris, Pradeep, Sunila, Rupaimoole, Rajesha, Dalkilic, Mehmet, Sood, Anil K., Burow, Matthew E., Tang, Haixu, Huang, Tim H., Liu, Yunlong, Rusch, Douglas B., Nephew, Kenneth P.

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Epigenetic Silencing of STAT3-Targeted miR-193a, by Constitutive Activation of JAK/STAT Signaling, Leads to Tumor Progression Through Overexpression of YWHAZ in Gastric Cancer von Wei, Kuo-Liang, Chou, Jian-Liang, Chen, Yin-Chen, Low, Jie-Ting, Lin, Guan-Ling, Liu, Jing-Lan, Chang, Te-Sheng, Chen, Wei-Ming, Hsieh, Yung-Yu, Yan, Pearlly S., Chuang, Yu-Ming, Lin, Jora M. J., Wu, Shu-Fen, Chiang, Ming-Ko, Li, Chin, Wu, Cheng-Shyong, Chan, Michael W. Y.

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T-bet Binding to Newly Identified Target Gene Promoters Is Cell Type-independent but Results in Variable Context-dependent Functional Effects von Beima, Kristin M., Miazgowicz, Michael M., Lewis, Megan D., Yan, Pearlly S., Huang, Tim H-M., Weinmann, Amy S.

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