Dissecting cellular crosstalk by sequencing physically interacting cells von Giladi, Amir, Cohen, Merav, Medaglia, Chiara, Baran, Yael, Li, Baoguo, Zada, Mor, Bost, Pierre, Blecher-Gonen, Ronnie, Salame, Tomer-Meir, Mayer, Johannes U., David, Eyal, Ronchese, Franca, Tanay, Amos, Amit, Ido

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Cell-cycle dynamics of chromosomal organization at single-cell resolution von Nagano, Takashi, Lubling, Yaniv, Várnai, Csilla, Dudley, Carmel, Leung, Wing, Baran, Yael, Mendelson Cohen, Netta, Wingett, Steven, Fraser, Peter, Tanay, Amos

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MetaCell: analysis of single-cell RNA-seq data using K-nn graph partitions von Baran, Yael, Bercovich, Akhiad, Sebe-Pedros, Arnau, Lubling, Yaniv, Giladi, Amir, Chomsky, Elad, Meir, Zohar, Hoichman, Michael, Lifshitz, Aviezer, Tanay, Amos

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Sparse PCA corrects for cell type heterogeneity in epigenome-wide association studies von Rahmani, Elior, Zaitlen, Noah, Baran, Yael, Eng, Celeste, Hu, Donglei, Galanter, Joshua, Oh, Sam, Burchard, Esteban G, Eskin, Eleazar, Zou, James, Halperin, Eran

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The landscape of genomic imprinting across diverse adult human tissues von Baran, Yael, Subramaniam, Meena, Biton, Anne, Tukiainen, Taru, Tsang, Emily K, Rivas, Manuel A, Pirinen, Matti, Gutierrez-Arcelus, Maria, Smith, Kevin S, Kukurba, Kim R, Zhang, Rui, Eng, Celeste, Torgerson, Dara G, Urbanek, Cydney, Li, Jin Billy, Rodriguez-Santana, Jose R, Burchard, Esteban G, Seibold, Max A, MacArthur, Daniel G, Montgomery, Stephen B, Zaitlen, Noah A, Lappalainen, Tuuli

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Fast and accurate inference of local ancestry in Latino populations von BARAN, Yael, PASANIUC, Bogdan, RODRIGUEZ-SANTANA, Jose, GONZALEZ BURCHARD, Esteban, HALPERIN, Eran, SANKARARAMAN, Sriram, TORGERSON, Dara G, GIGNOUX, Christopher, ENG, Celeste, RODRIGUEZ-CINTRON, William, CHAPELA, Rocio, FORD, Jean G, AVILA, Pedro C

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Single cell Hi-C identifies plastic chromosome conformations underlying the gastrulation enhancer landscape von Rappoport, Nimrod, Chomsky, Elad, Nagano, Takashi, Seibert, Charlie, Lubling, Yaniv, Baran, Yael, Lifshitz, Aviezer, Leung, Wing, Mukamel, Zohar, Shamir, Ron, Fraser, Peter, Tanay, Amos

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Characterization of whole-genome autosomal differences of DNA methylation between men and women von Singmann, Paula, Shem-Tov, Doron, Wahl, Simone, Grallert, Harald, Fiorito, Giovanni, Shin, So-Youn, Schramm, Katharina, Wolf, Petra, Kunze, Sonja, Baran, Yael, Guarrera, Simonetta, Vineis, Paolo, Krogh, Vittorio, Panico, Salvatore, Tumino, Rosario, Kretschmer, Anja, Gieger, Christian, Peters, Annette, Prokisch, Holger, Relton, Caroline L, Matullo, Giuseppe, Illig, Thomas, Waldenberger, Melanie, Halperin, Eran

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Joint Analysis of Multiple Metagenomic Samples von Baran, Yael, Halperin, Eran

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Dysfunctional CD8 T Cells Form a Proliferative, Dynamically Regulated Compartment within Human Melanoma von Li, Hanjie, van der Leun, Anne M., Yofe, Ido, Lubling, Yaniv, Gelbard-Solodkin, Dikla, van Akkooi, Alexander C.J., van den Braber, Marlous, Rozeman, Elisa A., Haanen, John B.A.G., Blank, Christian U., Horlings, Hugo M., David, Eyal, Baran, Yael, Bercovich, Akhiad, Lifshitz, Aviezer, Schumacher, Ton N., Tanay, Amos, Amit, Ido

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A Note on the Relations Between Spatio-Genetic Models von Baran, Yael, Halperin, Eran

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Correcting for cell-type heterogeneity in DNA methylation: a comprehensive evaluation von Rahmani, Elior, Zaitlen, Noah, Baran, Yael, Eng, Celeste, Hu, Donglei, Galanter, Joshua, Oh, Sam, Burchard, Esteban G, Eskin, Eleazar, Zou, James, Halperin, Eran

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Enhanced Localization of Genetic Samples through Linkage-Disequilibrium Correction von Baran, Yael, Quintela, Inés, Carracedo, Ángel, Pasaniuc, Bogdan, Halperin, Eran

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Dysfunctional CD8 T Cells Form a Proliferative, Dynamically Regulated Compartment within Human Melanoma von Li, Hanjie, van der Leun, Anne M., Yofe, Ido, Lubling, Yaniv, Gelbard-Solodkin, Dikla, van Akkooi, Alexander C.J., van den Braber, Marlous, Rozeman, Elisa A., Haanen, John B.A.G., Blank, Christian U., Horlings, Hugo M., David, Eyal, Baran, Yael, Bercovich, Akhiad, Lifshitz, Aviezer, Schumacher, Ton N., Tanay, Amos, Amit, Ido

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No Evidence from Genome-Wide Data of a Khazar Origin for the Ashkenazi Jews von Behar, Doron M., Metspalu, Mait, Baran, Yael, Kopelman, Naama M., Yunusbayev, Bayazit, Gladstein, Ariella, Tzur, Shay, Sahakyan, Hovhannes, Bahmanimehr, Ardeshir, Yepiskoposyan, Levon, Tambets, Kristiina, Khusnutdinova, Elza K., Kushniarevich, Alena, Balanovsky, Oleg, Balanovsky, Elena, Kovacevic, Lejla, Marjanovic, Damir, Mihailov, Evelin, Kouvatsi, Anastasia, Triantaphyllidis, Costas, King, Roy J., Semino, Ornella, Torroni, Antonio, Hammer, Michael F., Metspalu, Ene, Skorecki, Karl, Rosset, Saharon, Halperin, Eran, Villems, Richard, Rosenberg, Noah A.

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Abstract PR04: Single-cell analysis illuminates dysfunctional CD8+ T cells as a proliferative, dynamically regulated compartment within human melanoma von Yofe, Ido, Li, Hanjie, van der Leun, Anne, Lubling, Yaniv, Solodkin, Dikla Gelbard, van Akkooi, Alexander, Horlings, Hugo M., David, Eyal, Baran, Yael, Berkovitz, Akihad, Lifshitz, Aviezer, Schumacher, Ton N., Tanay, Amos, Amit, Ido

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PIGS: improved estimates of identity-by-descent probabilities by probabilistic IBD graph sampling von Park, Danny S, Baran, Yael, Hormozdiari, Farhad, Eng, Celeste, Torgerson, Dara G, Burchard, Esteban G, Zaitlen, Noah

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The European Collaborative Project on inflammation and vascular wall remodeling in Atherosclerosis - Intravascular Ultrasound (ATHEROREMO-IVUS) study von de Boer, Sanneke P M, Baran, Yael, Garcia-Garcia, Hector M, Eskin, Itamar, Lenzen, Mattie J, Kleber, Marcus E, Regar, Evelyn, de Jaegere, Peter J, Ligthart, Jurgen M, van Geuns, Robert Jan, Lehtimäki, Tehro, Laaksonen, Reijo, Boersma, Eric, März, Winfried, Halperin, Erin, Serruys, Patrick W, Koenig, Wolfgang

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Multiple-Ancestor Localization for Recently Admixed Individuals von Margalit, Yaron, Baran, Yael, Halperin, Eran

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No Evidence from Genome-wide Data of a Khazar Origin fo the Ashkenazi Jews von Doron M. Behar, Mait Metspalu, Yael Baran, Naama M. Kopelman, Bayazit Yunusbayev, Ariella Gladstein, Shay Tzur, Hovhannes Sahakyan, Ardeshir Bahmanimehr, Levon Yepiskoposyan, Kristiina Tambets, Elza K. Khusnutdinova, Alena Kushniarevich, Oleg Balanovsky, Elena Balanovsky, Lejla Kovacevic, Damir Marjanovic, Evelin Mohailov, Anastasia Kouvatsi, Costas Triantaphyllidis, Roy J. King, Ornella Semino, Antonio Torroni, Michael F. Hammer, Ene Metspalu, Karl Skorecki, Saharon Rosset, Eran Halperin, Richard Villems, Noah A. Rosenberg

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