Spatially resolved cell atlas of the mouse primary motor cortex by MERFISH von Zhang, Meng, Eichhorn, Stephen W., Zingg, Brian, Yao, Zizhen, Cotter, Kaelan, Zeng, Hongkui, Dong, Hongwei, Zhuang, Xiaowei

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Single-cell profiling of the developing mouse brain and spinal cord with split-pool barcoding von Rosenberg, Alexander B, Roco, Charles M, Muscat, Richard A, Kuchina, Anna, Sample, Paul, Yao, Zizhen, Graybuck, Lucas T, Peeler, David J, Mukherjee, Sumit, Chen, Wei, Pun, Suzie H, Sellers, Drew L, Tasic, Bosiljka, Seelig, Georg

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MYOD1 functions as a clock amplifier as well as a critical co-factor for downstream circadian gene expression in muscle von Hodge, Brian A, Zhang, Xiping, Gutierrez-Monreal, Miguel A, Cao, Yi, Hammers, David W, Yao, Zizhen, Wolff, Christopher A, Du, Ping, Kemler, Denise, Judge, Andrew R, Esser, Karyn A

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Distinct Activities of Myf5 and MyoD Indicate Separate Roles in Skeletal Muscle Lineage Specification and Differentiation von Conerly, Melissa L., Yao, Zizhen, Zhong, Jun Wen, Groudine, Mark, Tapscott, Stephen J.

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Alternating sources of perisomatic inhibition during behavior von Dudok, Barna, Klein, Peter M., Hwaun, Ernie, Lee, Brian R., Yao, Zizhen, Fong, Olivia, Bowler, John C., Terada, Satoshi, Sparks, Fraser T., Szabo, Gergely G., Farrell, Jordan S., Berg, Jim, Daigle, Tanya L., Tasic, Bosiljka, Dimidschstein, Jordane, Fishell, Gord, Losonczy, Attila, Zeng, Hongkui, Soltesz, Ivan

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Fixed single-cell transcriptomic characterization of human radial glial diversity von Thomsen, Elliot R, Mich, John K, Yao, Zizhen, Hodge, Rebecca D, Doyle, Adele M, Jang, Sumin, Shehata, Soraya I, Nelson, Angelique M, Shapovalova, Nadiya V, Levi, Boaz P, Ramanathan, Sharad

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DUX4-induced gene expression is the major molecular signature in FSHD skeletal muscle von Yao, Zizhen, Snider, Lauren, Balog, Judit, Lemmers, Richard J L F, Van Der Maarel, Silvère M, Tawil, Rabi, Tapscott, Stephen J

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Layer-specific chromatin accessibility landscapes reveal regulatory networks in adult mouse visual cortex von Gray, Lucas T, Yao, Zizhen, Nguyen, Thuc Nghi, Kim, Tae Kyung, Zeng, Hongkui, Tasic, Bosiljka

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Single-cell transcriptomic evidence for dense intracortical neuropeptide networks von Smith, Stephen J, Sümbül, Uygar, Graybuck, Lucas T, Collman, Forrest, Seshamani, Sharmishtaa, Gala, Rohan, Gliko, Olga, Elabbady, Leila, Miller, Jeremy A, Bakken, Trygve E, Rossier, Jean, Yao, Zizhen, Lein, Ed, Zeng, Hongkui, Tasic, Bosiljka, Hawrylycz, Michael

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CMfinder—a covariance model based RNA motif finding algorithm von Yao, Zizhen, Weinberg, Zasha, Ruzzo, Walter L.

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The identification and functional annotation of RNA structures conserved in vertebrates von Seemann, Stefan E, Mirza, Aashiq H, Hansen, Claus, Bang-Berthelsen, Claus H, Garde, Christian, Christensen-Dalsgaard, Mikkel, Torarinsson, Elfar, Yao, Zizhen, Workman, Christopher T, Pociot, Flemming, Nielsen, Henrik, Tommerup, Niels, Ruzzo, Walter L, Gorodkin, Jan

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Distinct Transcriptomic Cell Types and Neural Circuits of the Subiculum and Prosubiculum along the Dorsal-Ventral Axis von Ding, Song-Lin, Yao, Zizhen, Hirokawa, Karla E., Nguyen, Thuc Nghi, Graybuck, Lucas T., Fong, Olivia, Bohn, Phillip, Ngo, Kiet, Smith, Kimberly A., Koch, Christof, Phillips, John W., Lein, Ed S., Harris, Julie A., Tasic, Bosiljka, Zeng, Hongkui

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DUX4 binding to retroelements creates promoters that are active in FSHD muscle and testis von Young, Janet M, Whiddon, Jennifer L, Yao, Zizhen, Kasinathan, Bhavatharini, Snider, Lauren, Geng, Linda N, Balog, Judit, Tawil, Rabi, van der Maarel, Silvère M, Tapscott, Stephen J

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Tissue-specific splicing of a ubiquitously expressed transcription factor is essential for muscle differentiation von Sebastian, Soji, Faralli, Hervé, Yao, Zizhen, Rakopoulos, Patricia, Palii, Carmen, Cao, Yi, Singh, Kulwant, Liu, Qi-Cai, Chu, Alphonse, Aziz, Arif, Brand, Marjorie, Tapscott, Stephen J, Dilworth, F Jeffrey

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widespread riboswitch candidate that controls bacterial genes involved in molybdenum cofactor and tungsten cofactor metabolism von Regulski, Elizabeth E, Moy, Ryan H, Weinberg, Zasha, Barrick, Jeffrey E, Yao, Zizhen, Ruzzo, Walter L, Breaker, Ronald R

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Differential genomic targeting of the transcription factor TAL1 in alternate haematopoietic lineages von Palii, Carmen G, Perez-Iratxeta, Carolina, Yao, Zizhen, Cao, Yi, Dai, Fengtao, Davison, Jerry, Atkins, Harold, Allan, David, Dilworth, F Jeffrey, Gentleman, Robert, Tapscott, Stephen J, Brand, Marjorie

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Comparison of Genome-Wide Binding of MyoD in Normal Human Myogenic Cells and Rhabdomyosarcomas Identifies Regional and Local Suppression of Promyogenic Transcription Factors von MacQuarrie, Kyle L., Yao, Zizhen, Fong, Abraham P., Diede, Scott J., Rudzinski, Erin R., Hawkins, Douglas S., Tapscott, Stephen J.

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Identification of 22 candidate structured RNAs in bacteria using the CMfinder comparative genomics pipeline von Weinberg, Zasha, Barrick, Jeffrey E., Yao, Zizhen, Roth, Adam, Kim, Jane N., Gore, Jeremy, Wang, Joy Xin, Lee, Elaine R., Block, Kirsten F., Sudarsan, Narasimhan, Neph, Shane, Tompa, Martin, Ruzzo, Walter L., Breaker, Ronald R.

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Control of impulsivity by Gi-protein signalling in layer-5 pyramidal neurons of the anterior cingulate cortex von van der Veen, Bastiaan, Kapanaiah, Sampath K. T., Kilonzo, Kasyoka, Steele-Perkins, Peter, Jendryka, Martin M., Schulz, Stefanie, Tasic, Bosiljka, Yao, Zizhen, Zeng, Hongkui, Akam, Thomas, Nicholson, Janet R., Liss, Birgit, Nissen, Wiebke, Pekcec, Anton, Kätzel, Dennis

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Myod and H19-Igf2 locus interactions are required for diaphragm formation in the mouse von Borensztein, Maud, Monnier, Paul, Court, Franck, Louault, Yann, Ripoche, Marie-Anne, Tiret, Laurent, Yao, Zizhen, Tapscott, Stephen J, Forné, Thierry, Montarras, Didier, Dandolo, Luisa

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