GToTree: a user-friendly workflow for phylogenomics von Lee, Michael D

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Protein–protein interaction site prediction through combining local and global features with deep neural networks von Zeng, Min, Zhang, Fuhao, Wu, Fang-Xiang, Li, Yaohang, Wang, Jianxin, Li, Min

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The VEGA suite of programs: an versatile platform for cheminformatics and drug design projects von Pedretti, Alessandro, Mazzolari, Angelica, Gervasoni, Silvia, Fumagalli, Laura, Vistoli, Giulio

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COVID-19 Docking Server: a meta server for docking small molecules, peptides and antibodies against potential targets of COVID-19 von Kong, Ren, Yang, Guangbo, Xue, Rui, Liu, Ming, Wang, Feng, Hu, Jianping, Guo, Xiaoqiang, Chang, Shan

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Protein interaction interface region prediction by geometric deep learning von Dai, Bowen, Bailey-Kellogg, Chris

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Flower plantings increase wild bee abundance and the pollination services provided to a pollination‐dependent crop von Blaauw, Brett R, Isaacs, Rufus, Clough, Yann

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UDSMProt: universal deep sequence models for protein classification von Strodthoff, Nils, Wagner, Patrick, Wenzel, Markus, Samek, Wojciech

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LigRMSD: a web server for automatic structure matching and RMSD calculations among identical and similar compounds in protein-ligand docking von Velázquez-Libera, José Luis, Durán-Verdugo, Fabio, Valdés-Jiménez, Alejandro, Núñez-Vivanco, Gabriel, Caballero, Julio

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arcasHLA: high-resolution HLA typing from RNAseq von Orenbuch, Rose, Filip, Ioan, Comito, Devon, Shaman, Jeffrey, Pe’er, Itsik, Rabadan, Raul

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First-Order Phase Transition Interpretation of Pulsar Timing Array Signal Is Consistent with Solar-Mass Black Holes von Gouttenoire, Yann

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Dingo Optimizer: A Nature-Inspired Metaheuristic Approach for Engineering Problems von Bairwa, Amit Kumar, Joshi, Sandeep, Singh, Dilbag

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Webina: an open-source library and web app that runs AutoDock Vina entirely in the web browser von Kochnev, Yuri, Hellemann, Erich, Cassidy, Kevin C, Durrant, Jacob D

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GraphQA: protein model quality assessment using graph convolutional networks von Baldassarre, Federico, Menéndez Hurtado, David, Elofsson, Arne, Azizpour, Hossein

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Protein docking model evaluation by 3D deep convolutional neural networks von Wang, Xiao, Terashi, Genki, Christoffer, Charles W, Zhu, Mengmeng, Kihara, Daisuke

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Rhapsody: predicting the pathogenicity of human missense variants von Ponzoni, Luca, Peñaherrera, Daniel A, Oltvai, Zoltán N, Bahar, Ivet

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MobiDB-lite 3.0: fast consensus annotation of intrinsic disorder flavors in proteins von Necci, Marco, Piovesan, Damiano, Clementel, Damiano, Dosztányi, Zsuzsanna, Tosatto, Silvio C E

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Estimating the power of sequence covariation for detecting conserved RNA structure von Rivas, Elena, Clements, Jody, Eddy, Sean R

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PyDESeq2: a python package for bulk RNA-seq differential expression analysis von Muzellec, Boris, Teleńczuk, Maria, Cabeli, Vincent, Andreux, Mathieu

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Self-Organizing Feature Maps Identify Proteins Critical to Learning in a Mouse Model of Down Syndrome von Higuera, Clara, Gardiner, Katheleen J, Cios, Krzysztof J

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PROSS 2: a new server for the design of stable and highly expressed protein variants von Weinstein, Jonathan Jacob, Goldenzweig, Adi, Hoch, ShlomoYakir, Fleishman, Sarel Jacob

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