Capturing non-local interactions by long short-term memory bidirectional recurrent neural networks for improving prediction of protein secondary structure, backbone angles, contact... von Heffernan, Rhys, Yang, Yuedong, Paliwal, Kuldip, Zhou, Yaoqi

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Improving protein disorder prediction by deep bidirectional long short-term memory recurrent neural networks von Hanson, Jack, Yang, Yuedong, Paliwal, Kuldip, Zhou, Yaoqi

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Predicting Retrosynthetic Reactions Using Self-Corrected Transformer Neural Networks von Zheng, Shuangjia, Rao, Jiahua, Zhang, Zhongyue, Xu, Jun, Yang, Yuedong

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Improving protein fold recognition and template-based modeling by employing probabilistic-based matching between predicted one-dimensional structural properties of query and corres... von Yang, Yuedong, Faraggi, Eshel, Zhao, Huiying, Zhou, Yaoqi

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An Insight into Anti-Inflammatory Activities and Inflammation Related Diseases of Anthocyanins: A Review of Both In Vivo and In Vitro Investigations von Ma, Zilong, Du, Bin, Li, Jun, Yang, Yuedong, Zhu, Fengmei

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Sixty-five years of the long march in protein secondary structure prediction: the final stretch? von Yang, Yuedong, Gao, Jianzhao, Wang, Jihua, Heffernan, Rhys, Hanson, Jack, Paliwal, Kuldip, Zhou, Yaoqi

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PharmKG: a dedicated knowledge graph benchmark for bomedical data mining von Zheng, Shuangjia, Rao, Jiahua, Song, Ying, Zhang, Jixian, Xiao, Xianglu, Fang, Evandro Fei, Yang, Yuedong, Niu, Zhangming

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Structure-aware protein solubility prediction from sequence through graph convolutional network and predicted contact map von Chen, Jianwen, Zheng, Shuangjia, Zhao, Huiying, Yang, Yuedong

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Improving prediction of secondary structure, local backbone angles and solvent accessible surface area of proteins by iterative deep learning von Heffernan, Rhys, Paliwal, Kuldip, Lyons, James, Dehzangi, Abdollah, Sharma, Alok, Wang, Jihua, Sattar, Abdul, Yang, Yuedong, Zhou, Yaoqi

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Single‐sequence‐based prediction of protein secondary structures and solvent accessibility by deep whole‐sequence learning von Heffernan, Rhys, Paliwal, Kuldip, Lyons, James, Singh, Jaswinder, Yang, Yuedong, Zhou, Yaoqi

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Deep learning driven biosynthetic pathways navigation for natural products with BioNavi-NP von Zheng, Shuangjia, Zeng, Tao, Li, Chengtao, Chen, Binghong, Coley, Connor W., Yang, Yuedong, Wu, Ruibo

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Genome-scale annotation of protein binding sites via language model and geometric deep learning von Yuan, Qianmu, Tian, Chong, Yang, Yuedong

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SPIDER2: A Package to Predict Secondary Structure, Accessible Surface Area, and Main-Chain Torsional Angles by Deep Neural Networks von Yang, Yuedong, Heffernan, Rhys, Paliwal, Kuldip, Lyons, James, Dehzangi, Abdollah, Sharma, Alok, Wang, Jihua, Sattar, Abdul, Zhou, Yaoqi

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SPIN2: Predicting sequence profiles from protein structures using deep neural networks von O'Connell, James, Li, Zhixiu, Hanson, Jack, Heffernan, Rhys, Lyons, James, Paliwal, Kuldip, Dehzangi, Abdollah, Yang, Yuedong, Zhou, Yaoqi

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Characterization and Anti-Inflammatory Potential of an Exopolysaccharide from Submerged Mycelial Culture of Schizophyllum commune von Du, Bin, Yang, Yuedong, Bian, Zhaoxiang, Xu, Baojun

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Protein complex structure modeling by cross-modal alignment between cryo-EM maps and protein sequences von Chen, Sheng, Zhang, Sen, Fang, Xiaoyu, Lin, Liang, Zhao, Huiying, Yang, Yuedong

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Structural insights into the histone H1-nucleosome complex von Zhou, Bing-Rui, Feng, Hanqiao, Kato, Hidenori, Dia, Liang, Yang, Yuedong, Zhou, Yaoqi, Bai, Yawen

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Accurately predicting enzyme functions through geometric graph learning on ESMFold-predicted structures von Song, Yidong, Yuan, Qianmu, Chen, Sheng, Zeng, Yuansong, Zhao, Huiying, Yang, Yuedong

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Imputing single-cell RNA-seq data by combining graph convolution and autoencoder neural networks von Rao, Jiahua, Zhou, Xiang, Lu, Yutong, Zhao, Huiying, Yang, Yuedong

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Sequence-based prediction of protein-peptide binding sites using support vector machine von Taherzadeh, Ghazaleh, Yang, Yuedong, Zhang, Tuo, Liew, Alan Wee-Chung, Zhou, Yaoqi

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