Metagenome-wide association of gut microbiome features for schizophrenia von Zhu, Feng, Ju, Yanmei, Wang, Wei, Wang, Qi, Guo, Ruijin, Ma, Qingyan, Sun, Qiang, Fan, Yajuan, Xie, Yuying, Yang, Zai, Jie, Zhuye, Zhao, Binbin, Xiao, Liang, Yang, Lin, Zhang, Tao, Feng, Junqin, Guo, Liyang, He, Xiaoyan, Chen, Yunchun, Chen, Ce, Gao, Chengge, Xu, Xun, Yang, Huanming, Wang, Jian, Dang, Yonghui, Madsen, Lise, Brix, Susanne, Kristiansen, Karsten, Jia, Huijue, Ma, Xiancang

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Deconvolution of single-cell multi-omics layers reveals regulatory heterogeneity von Liu, Longqi, Liu, Chuanyu, Quintero, Andrés, Wu, Liang, Yuan, Yue, Wang, Mingyue, Cheng, Mengnan, Leng, Lizhi, Xu, Liqin, Dong, Guoyi, Li, Rui, Liu, Yang, Wei, Xiaoyu, Xu, Jiangshan, Chen, Xiaowei, Lu, Haorong, Chen, Dongsheng, Wang, Quanlei, Zhou, Qing, Lin, Xinxin, Li, Guibo, Liu, Shiping, Wang, Qi, Wang, Hongru, Fink, J. Lynn, Gao, Zhengliang, Liu, Xin, Hou, Yong, Zhu, Shida, Yang, Huanming, Ye, Yunming, Lin, Ge, Chen, Fang, Herrmann, Carl, Eils, Roland, Shang, Zhouchun, Xu, Xun

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Single-cell landscape of the ecosystem in early-relapse hepatocellular carcinoma von Sun, Yunfan, Wu, Liang, Zhong, Yu, Zhou, Kaiqian, Hou, Yong, Wang, Zifei, Zhang, Zefan, Xie, Jiarui, Wang, Chunqing, Chen, Dandan, Huang, Yaling, Wei, Xiaochan, Shi, Yinghong, Zhao, Zhikun, Li, Yuehua, Guo, Ziwei, Yu, Qichao, Xu, Liqin, Volpe, Giacomo, Qiu, Shuangjian, Zhou, Jian, Ward, Carl, Sun, Huichuan, Yin, Ye, Xu, Xun, Wang, Xiangdong, Esteban, Miguel A., Yang, Huanming, Wang, Jian, Dean, Michael, Zhang, Yaguang, Liu, Shiping, Yang, Xinrong, Fan, Jia

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Enhancing CRISPR-Cas9 gRNA efficiency prediction by data integration and deep learning von Xiang, Xi, Corsi, Giulia I., Anthon, Christian, Qu, Kunli, Pan, Xiaoguang, Liang, Xue, Han, Peng, Dong, Zhanying, Liu, Lijun, Zhong, Jiayan, Ma, Tao, Wang, Jinbao, Zhang, Xiuqing, Jiang, Hui, Xu, Fengping, Liu, Xin, Xu, Xun, Wang, Jian, Yang, Huanming, Bolund, Lars, Church, George M., Lin, Lin, Gorodkin, Jan, Luo, Yonglun

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WEGO 2.0: a web tool for analyzing and plotting GO annotations, 2018 update von Ye, Jia, Zhang, Yong, Cui, Huihai, Liu, Jiawei, Wu, Yuqing, Cheng, Yun, Xu, Huixing, Huang, Xingxin, Li, Shengting, Zhou, An, Zhang, Xiuqing, Bolund, Lars, Chen, Qiang, Wang, Jian, Yang, Huanming, Fang, Lin, Shi, Chunmei

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An integrated chromatin accessibility and transcriptome landscape of human pre-implantation embryos von Liu, Longqi, Leng, Lizhi, Liu, Chuanyu, Lu, Changfu, Yuan, Yue, Wu, Liang, Gong, Fei, Zhang, Shuoping, Wei, Xiaoyu, Wang, Mingyue, Zhao, Lei, Hu, Liang, Wang, Jian, Yang, Huanming, Zhu, Shida, Chen, Fang, Lu, Guangxiu, Shang, Zhouchun, Lin, Ge

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Prophage Hunter: an integrative hunting tool for active prophages von Song, Wenchen, Sun, Hai-Xi, Zhang, Carolyn, Cheng, Li, Peng, Ye, Deng, Ziqing, Wang, Dan, Wang, Yun, Hu, Ming, Liu, Wenen, Yang, Huanming, Shen, Yue, Li, Junhua, You, Lingchong, Xiao, Minfeng

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An atlas of the protein-coding genes in the human, pig, and mouse brain von Sjöstedt, Evelina, Zhong, Wen, Fagerberg, Linn, Karlsson, Max, Mitsios, Nicholas, Adori, Csaba, Oksvold, Per, Edfors, Fredrik, Limiszewska, Agnieszka, Hikmet, Feria, Huang, Jinrong, Du, Yutao, Lin, Lin, Dong, Zhanying, Yang, Ling, Liu, Xin, Jiang, Hui, Xu, Xun, Wang, Jian, Yang, Huanming, Bolund, Lars, Mardinoglu, Adil, Zhang, Cheng, von Feilitzen, Kalle, Lindskog, Cecilia, Pontén, Fredrik, Luo, Yonglun, Hökfelt, Tomas, Uhlén, Mathias, Mulder, Jan

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Microbial functional changes mark irreversible course of Tibetan grassland degradation von Breidenbach, Andreas, Schleuss, Per-Marten, Liu, Shibin, Schneider, Dominik, Dippold, Michaela A., de la Haye, Tilman, Miehe, Georg, Heitkamp, Felix, Seeber, Elke, Mason-Jones, Kyle, Xu, Xingliang, Huanming, Yang, Xu, Jianchu, Dorji, Tsechoe, Gube, Matthias, Norf, Helge, Meier, Jutta, Guggenberger, Georg, Kuzyakov, Yakov, Spielvogel, Sandra

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SNP detection for massively parallel whole-genome resequencing von Li, Ruiqiang, Li, Yingrui, Fang, Xiaodong, Yang, Huanming, Wang, Jian, Kristiansen, Karsten, Wang, Jun

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Transplantation of microbiota from drug-free patients with schizophrenia causes schizophrenia-like abnormal behaviors and dysregulated kynurenine metabolism in mice von Zhu, Feng, Guo, Ruijin, Wang, Wei, Ju, Yanmei, Wang, Qi, Ma, Qingyan, Sun, Qiang, Fan, Yajuan, Xie, Yuying, Yang, Zai, Jie, Zhuye, Zhao, Binbin, Xiao, Liang, Yang, Lin, Zhang, Tao, Liu, Bing, Guo, Liyang, He, Xiaoyan, Chen, Yunchun, Chen, Ce, Gao, Chengge, Xu, Xun, Yang, Huanming, Wang, Jian, Dang, Yonghui, Madsen, Lise, Brix, Susanne, Kristiansen, Karsten, Jia, Huijue, Ma, Xiancang

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SOAPnuke: a MapReduce acceleration-supported software for integrated quality control and preprocessing of high-throughput sequencing data von Chen, Yuxin, Chen, Yongsheng, Shi, Chunmei, Huang, Zhibo, Zhang, Yong, Li, Shengkang, Li, Yan, Ye, Jia, Yu, Chang, Li, Zhuo, Zhang, Xiuqing, Wang, Jian, Yang, Huanming, Fang, Lin, Chen, Qiang

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1,520 reference genomes from cultivated human gut bacteria enable functional microbiome analyses von Zou, Yuanqiang, Xue, Wenbin, Luo, Guangwen, Deng, Ziqing, Qin, Panpan, Guo, Ruijin, Sun, Haipeng, Xia, Yan, Liang, Suisha, Dai, Ying, Wan, Daiwei, Jiang, Rongrong, Su, Lili, Feng, Qiang, Jie, Zhuye, Guo, Tongkun, Xia, Zhongkui, Liu, Chuan, Yu, Jinghong, Lin, Yuxiang, Tang, Shanmei, Huo, Guicheng, Xu, Xun, Hou, Yong, Liu, Xin, Wang, Jian, Yang, Huanming, Kristiansen, Karsten, Li, Junhua, Jia, Huijue, Xiao, Liang

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Hierarchical graph learning for protein–protein interaction von Gao, Ziqi, Jiang, Chenran, Zhang, Jiawen, Jiang, Xiaosen, Li, Lanqing, Zhao, Peilin, Yang, Huanming, Huang, Yong, Li, Jia

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Gut microbiome-related effects of berberine and probiotics on type 2 diabetes (the PREMOTE study) von Zhang, Yifei, Gu, Yanyun, Ren, Huahui, Wang, Shujie, Zhong, Huanzi, Zhao, Xinjie, Ma, Jing, Gu, Xuejiang, Xue, Yaoming, Huang, Shan, Yang, Jialin, Chen, Li, Chen, Gang, Qu, Shen, Liang, Jun, Qin, Li, Huang, Qin, Peng, Yongde, Li, Qi, Wang, Xiaolin, Kong, Ping, Hou, Guixue, Gao, Mengyu, Shi, Zhun, Li, Xuelin, Qiu, Yixuan, Zou, Yuanqiang, Yang, Huanming, Wang, Jian, Xu, Guowang, Lai, Shenghan, Li, Junhua, Ning, Guang, Wang, Weiqing

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The structure and function of the global citrus rhizosphere microbiome von Xu, Jin, Zhang, Yunzeng, Zhang, Pengfan, Trivedi, Pankaj, Riera, Nadia, Wang, Yayu, Liu, Xin, Fan, Guangyi, Tang, Jiliang, Coletta-Filho, Helvécio D., Cubero, Jaime, Deng, Xiaoling, Ancona, Veronica, Lu, Zhanjun, Zhong, Balian, Roper, M. Caroline, Capote, Nieves, Catara, Vittoria, Pietersen, Gerhard, Vernière, Christian, Al-Sadi, Abdullah M., Li, Lei, Yang, Fan, Xu, Xun, Wang, Jian, Yang, Huanming, Jin, Tao, Wang, Nian

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Open-Source Genomic Analysis of Shiga-Toxin–Producing E. coli O104:H4 von Rohde, Holger, Qin, Junjie, Cui, Yujun, Li, Dongfang, Li, Yin, Li, Junhua, Li, Shenghui, Li, Yingrui, Loman, Nicholas J, Hentschke, Moritz, Chen, Wentong, Pu, Fei, Peng, Yangqing, Xi, Feng, Zhang, Zhaoxi, Yang, Liang, Yang, Huanming, Yang, Ruifu, Yang, Xianwei, Zhao, Xiangna, Zhao, Meiru, Wang, Jian, Wang, Jun, Wang, Peng, Guan, Yuanlin, Cen, Zhong, Christner, Martin, Kobbe, Robin, Loos, Sebastian, Oh, Jun, Danchin, Antoine, Gao, George F, Song, Yajun, Xu, Jianguo, Pallen, Mark J, Aepfelbacher, Martin

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Gut microbiome and serum metabolome alterations in obesity and after weight-loss intervention von Liu, Ruixin, Hong, Jie, Xu, Xiaoqiang, Feng, Qiang, Zhang, Dongya, Gu, Yanyun, Shi, Juan, Zhao, Shaoqian, Liu, Wen, Wang, Xiaokai, Xia, Huihua, Liu, Zhipeng, Cui, Bin, Liang, Peiwen, Xi, Liuqing, Jin, Jiabin, Ying, Xiayang, Wang, Xiaolin, Zhao, Xinjie, Li, Wanyu, Jia, Huijue, Lan, Zhou, Li, Fengyu, Wang, Rui, Sun, Yingkai, Yang, Minglan, Shen, Yuxin, Jie, Zhuye, Li, Junhua, Chen, Xiaomin, Zhong, Huanzi, Xie, Hailiang, Zhang, Yifei, Gu, Weiqiong, Deng, Xiaxing, Shen, Baiyong, Xu, Xun, Yang, Huanming, Xu, Guowang, Bi, Yufang, Lai, Shenghan, Wang, Jian, Qi, Lu, Madsen, Lise, Wang, Jiqiu, Ning, Guang, Kristiansen, Karsten, Wang, Weiqing

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Analysis of 427 genomes reveals moso bamboo population structure and genetic basis of property traits von Zhao, Hansheng, Sun, Shuai, Ding, Yulong, Wang, Yue, Yue, Xianghua, Du, Xiao, Wei, Qiang, Fan, Guangyi, Sun, Huayu, Lou, Yongfeng, Yang, Huanming, Wang, Jian, Xu, Xun, Li, Lichao, Yang, Kebin, Xu, Hao, Wang, Jiongliang, Zhu, Chenglei, Wang, Sining, Shan, Xuemeng, Hou, Yinguang, Wang, Yu, Fei, Benhua, Liu, Xin, Jiang, Zehui, Gao, Zhimin

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The microbiota continuum along the female reproductive tract and its relation to uterine-related diseases von Chen, Chen, Song, Xiaolei, Wei, Weixia, Zhong, Huanzi, Dai, Juanjuan, Lan, Zhou, Li, Fei, Yu, Xinlei, Feng, Qiang, Wang, Zirong, Xie, Hailiang, Chen, Xiaomin, Zeng, Chunwei, Wen, Bo, Zeng, Liping, Du, Hui, Tang, Huiru, Xu, Changlu, Xia, Yan, Xia, Huihua, Yang, Huanming, Wang, Jian, Wang, Jun, Madsen, Lise, Brix, Susanne, Kristiansen, Karsten, Xu, Xun, Li, Junhua, Wu, Ruifang, Jia, Huijue

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