Significance of the gut microbiome in multistep colorectal carcinogenesis von Mizutani, Sayaka, Yamada, Takuji, Yachida, Shinichi

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Metagenomic and metabolomic analyses reveal distinct stage-specific phenotypes of the gut microbiota in colorectal cancer von Yachida, Shinichi, Mizutani, Sayaka, Shiroma, Hirotsugu, Shiba, Satoshi, Nakajima, Takeshi, Sakamoto, Taku, Watanabe, Hikaru, Masuda, Keigo, Nishimoto, Yuichiro, Kubo, Masaru, Hosoda, Fumie, Rokutan, Hirofumi, Matsumoto, Minori, Takamaru, Hiroyuki, Yamada, Masayoshi, Matsuda, Takahisa, Iwasaki, Motoki, Yamaji, Taiki, Yachida, Tatsuo, Soga, Tomoyoshi, Kurokawa, Ken, Toyoda, Atsushi, Ogura, Yoshitoshi, Hayashi, Tetsuya, Hatakeyama, Masanori, Nakagama, Hitoshi, Saito, Yutaka, Fukuda, Shinji, Shibata, Tatsuhiro, Yamada, Takuji

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Recent advances of machine learning applications in human gut microbiota study: from observational analysis toward causal inference and clinical intervention von Salim, Felix, Mizutani, Sayaka, Zolfo, Moreno, Yamada, Takuji

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Metagenomic and metabolomic analyses reveal distinct stage-specific phenotypes of the gut microbiota in colorectal cancer von Yamada, Takuji

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QNetDiff: a quantitative measurement of network rewiring von Nose, Shota, Shiroma, Hirotsugu, Yamada, Takuji, Uno, Yushi

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Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific for colorectal cancer von Wirbel, Jakob, Pyl, Paul Theodor, Kartal, Ece, Zych, Konrad, Kashani, Alireza, Milanese, Alessio, Fleck, Jonas S., Voigt, Anita Y., Palleja, Albert, Ponnudurai, Ruby, Sunagawa, Shinichi, Coelho, Luis Pedro, Schrotz-King, Petra, Vogtmann, Emily, Habermann, Nina, Niméus, Emma, Thomas, Andrew M., Manghi, Paolo, Gandini, Sara, Serrano, Davide, Mizutani, Sayaka, Shiroma, Hirotsugu, Shiba, Satoshi, Shibata, Tatsuhiro, Yachida, Shinichi, Yamada, Takuji, Waldron, Levi, Naccarati, Alessio, Segata, Nicola, Sinha, Rashmi, Ulrich, Cornelia M., Brenner, Hermann, Arumugam, Manimozhiyan, Bork, Peer, Zeller, Georg

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The relationships between microbiota and the amino acids and organic acids in commercial vegetable pickle fermented in rice-bran beds von Sawada, Kazunori, Koyano, Hitoshi, Yamamoto, Nozomi, Yamada, Takuji

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Metagenomic analysis of colorectal cancer datasets identifies cross-cohort microbial diagnostic signatures and a link with choline degradation von Thomas, Andrew Maltez, Manghi, Paolo, Asnicar, Francesco, Pasolli, Edoardo, Armanini, Federica, Zolfo, Moreno, Beghini, Francesco, Manara, Serena, Karcher, Nicolai, Pozzi, Chiara, Gandini, Sara, Serrano, Davide, Tarallo, Sonia, Francavilla, Antonio, Gallo, Gaetano, Trompetto, Mario, Ferrero, Giulio, Mizutani, Sayaka, Shiroma, Hirotsugu, Shiba, Satoshi, Shibata, Tatsuhiro, Yachida, Shinichi, Yamada, Takuji, Wirbel, Jakob, Schrotz-King, Petra, Ulrich, Cornelia M., Brenner, Hermann, Arumugam, Manimozhiyan, Bork, Peer, Zeller, Georg, Cordero, Francesca, Dias-Neto, Emmanuel, Setubal, João Carlos, Tett, Adrian, Pardini, Barbara, Rescigno, Maria, Waldron, Levi, Naccarati, Alessio, Segata, Nicola

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A key genetic factor for fucosyllactose utilization affects infant gut microbiota development von Matsuki, Takahiro, Yahagi, Kana, Mori, Hiroshi, Matsumoto, Hoshitaka, Hara, Taeko, Tajima, Saya, Ogawa, Eishin, Kodama, Hiroko, Yamamoto, Kazuya, Yamada, Takuji, Matsumoto, Satoshi, Kurokawa, Ken

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Evolution of biomolecular networks - lessons from metabolic and protein interactions von Bork, Peer, Yamada, Takuji

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Evolution of Aspergillus oryzae before and after domestication inferred by large-scale comparative genomic analysis von Watarai, Naoki, Yamamoto, Nozomi, Sawada, Kazunori, Yamada, Takuji

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Spatio-temporal characteristics of frictional properties on the subducting Pacific Plate off the east of Tohoku district, Japan estimated from stress drops of small earthquakes von Yamada, Takuji, Duan, Meitong, Kawahara, Jun

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Linking the spatiotemporal distribution of static stress drops to source faults in a fluid-driven earthquake swarm, northeastern Noto Peninsula, central Japan von Fukuoka, Mitsuteru, Hiramatsu, Yoshihiro, Yamada, Takuji

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FuncTree2: an interactive radial tree for functional hierarchies and omics data visualization von Darzi, Youssef, Yamate, Yuta, Yamada, Takuji

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Influence of the initial microbiota on eggplant shibazuke pickle and eggplant juice fermentation von Sawada, Kazunori, Yamada, Takuji

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Gut Microbiome and Plasma Microbiome-Related Metabolites in Patients With Decompensated and Compensated Heart Failure von Hayashi, Tomohiro, Yamashita, Tomoya, Watanabe, Hikaru, Kami, Kenjiro, Yoshida, Naofumi, Tabata, Tokiko, Emoto, Takuo, Sasaki, Naoto, Mizoguchi, Taiji, Irino, Yasuhiro, Toh, Ryuji, Shinohara, Masakazu, Okada, Yuko, Ogawa, Wataru, Yamada, Takuji, Hirata, Ken-ichi

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Leveraging explainable AI for gut microbiome-based colorectal cancer classification von Rynazal, Ryza, Fujisawa, Kota, Shiroma, Hirotsugu, Salim, Felix, Mizutani, Sayaka, Shiba, Satoshi, Yachida, Shinichi, Yamada, Takuji

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Potential of fecal microbiota for early‐stage detection of colorectal cancer von Zeller, Georg, Tap, Julien, Voigt, Anita Y, Sunagawa, Shinichi, Kultima, Jens Roat, Costea, Paul I, Amiot, Aurélien, Böhm, Jürgen, Brunetti, Francesco, Habermann, Nina, Hercog, Rajna, Koch, Moritz, Luciani, Alain, Mende, Daniel R, Schneider, Martin A, Schrotz‐King, Petra, Tournigand, Christophe, Tran Van Nhieu, Jeanne, Yamada, Takuji, Zimmermann, Jürgen, Benes, Vladimir, Kloor, Matthias, Ulrich, Cornelia M, von Knebel Doeberitz, Magnus, Sobhani, Iradj, Bork, Peer

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Comparison of oral metabolome profiles of stimulated saliva, unstimulated saliva, and mouth-rinsed water von Maruyama, Yuki, Nishimoto, Yuichiro, Umezawa, Kouta, Kawamata, Ryosuke, Ichiba, Yuko, Tsutsumi, Kota, Kimura, Mitsuo, Murakami, Shinnosuke, Kakizawa, Yasushi, Kumagai, Takashi, Yamada, Takuji, Fukuda, Shinji

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The transcription factor ATF7 mediates lipopolysaccharide-induced epigenetic changes in macrophages involved in innate immunological memory von Yoshida, Keisuke, Maekawa, Toshio, Zhu, Yujuan, Renard-Guillet, Claire, Chatton, Bruno, Inoue, Kentaro, Uchiyama, Takeru, Ishibashi, Ken-ichi, Yamada, Takuji, Ohno, Naohito, Shirahige, Katsuhiko, Okada-Hatakeyama, Mariko, Ishii, Shunsuke

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