Markov dynamics as a zooming lens for multiscale community detection: non clique-like communities and the field-of-view limit von Schaub, Michael T, Delvenne, Jean-Charles, Yaliraki, Sophia N, Barahona, Mauricio

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ProteinLens: a web-based application for the analysis of allosteric signalling on atomistic graphs of biomolecules von Mersmann, Sophia F, Strömich, Léonie, Song, Florian J, Wu, Nan, Vianello, Francesca, Barahona, Mauricio, Yaliraki, Sophia N

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Interest communities and flow roles in directed networks: the Twitter network of the UK riots von Beguerisse-Díaz, Mariano, Garduño-Hernández, Guillermo, Vangelov, Borislav, Yaliraki, Sophia N., Barahona, Mauricio

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Allosteric communication and signal transduction in proteins von Wu, Nan, Barahona, Mauricio, Yaliraki, Sophia N.

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Understanding learner behaviour in online courses with Bayesian modelling and time series characterisation von Peach, Robert L., Greenbury, Sam F., Johnston, Iain G., Yaliraki, Sophia N., Lefevre, David J., Barahona, Mauricio

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Prediction of Protein Allosteric Signalling Pathways and Functional Residues Through Paths of Optimised Propensity von Wu, Nan, Yaliraki, Sophia N., Barahona, Mauricio

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From alchemist to AI chemist von Greenaway, Rebecca L., Jelfs, Kim E., Spivey, Alan C., Yaliraki, Sophia N.

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Allosteric Hotspots in the Main Protease of SARS-CoV-2 von Strömich, Léonie, Wu, Nan, Barahona, Mauricio, Yaliraki, Sophia N.

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From free text to clusters of content in health records: an unsupervised graph partitioning approach von Altuncu, M. Tarik, Mayer, Erik, Yaliraki, Sophia N., Barahona, Mauricio

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Allostery and cooperativity in multimeric proteins: bond-to-bond propensities in ATCase von Hodges, Maxwell, Barahona, Mauricio, Yaliraki, Sophia N.

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Data-driven unsupervised clustering of online learner behaviour von Peach, Robert L., Yaliraki, Sophia N., Lefevre, David, Barahona, Mauricio

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Prediction of allosteric sites and signaling: Insights from benchmarking datasets von Wu, Nan, Strömich, Léonie, Yaliraki, Sophia N.

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Chemistry across scales: from molecules to cells von Yaliraki, Sophia N, Barahona, Mauricio

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Great cities look small von Sim, Aaron, Yaliraki, Sophia N., Barahona, Mauricio, Stumpf, Michael P. H.

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A computational modeling approach for enhancing self-assembly and biofunctionalisation of collagen biomimetic peptides von Krishnamoorthy, Navaneethakrishnan, Yacoub, Magdi H, Yaliraki, Sophia N

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Investigating the reliability and interpretability of machine learning frameworks for chemical retrosynthesis von Hastedt, Friedrich, Bailey, Rowan M, Hellgardt, Klaus, Yaliraki, Sophia N, del Rio Chanona, Ehecatl Antonio, Zhang, Dongda

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HCGA: Highly comparative graph analysis for network phenotyping von Peach, Robert L., Arnaudon, Alexis, Schmidt, Julia A., Palasciano, Henry A., Bernier, Nathan R., Jelfs, Kim E., Yaliraki, Sophia N., Barahona, Mauricio

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Structure of complex networks: Quantifying edge-to-edge relations by failure-induced flow redistribution von SCHAUB, MICHAEL T., LEHMANN, JÖRG, YALIRAKI, SOPHIA N., BARAHONA, MAURICIO

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Edge-based formulation of elastic network models von Hodges, Maxwell, Yaliraki, Sophia N., Barahona, Mauricio

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The directional contact distance of two ellipsoids: Coarse-grained potentials for anisotropic interactions von Paramonov, Leonid, Yaliraki, Sophia N.

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