dbCAN: a web resource for automated carbohydrate-active enzyme annotation von Yin, Yanbin, Mao, Xizeng, Yang, Jincai, Chen, Xin, Mao, Fenglou, Xu, Ying

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KOBAS 2.0: a web server for annotation and identification of enriched pathways and diseases von Xie, Chen, Mao, Xizeng, Huang, Jiaju, Ding, Yang, Wu, Jianmin, Dong, Shan, Kong, Lei, Gao, Ge, Li, Chuan-Yun, Wei, Liping

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The histologic phenotype of lung cancers is associated with transcriptomic features rather than genomic characteristics von Tang, Ming, Abbas, Hussein A., Negrao, Marcelo V., Ramineni, Maheshwari, Hu, Xin, Hubert, Shawna Marie, Fujimoto, Junya, Reuben, Alexandre, Varghese, Susan, Zhang, Jianhua, Li, Jun, Chow, Chi-Wan, Mao, Xizeng, Song, Xingzhi, Lee, Won-Chul, Wu, Jia, Little, Latasha, Gumbs, Curtis, Behrens, Carmen, Moran, Cesar, Weissferdt, Annikka, Lee, J. Jack, Sepesi, Boris, Swisher, Stephen, Cheng, Chao, Kurie, Jonathan, Gibbons, Don, Heymach, John V., Wistuba, Ignacio I., Futreal, P. Andrew, Kalhor, Neda, Zhang, Jianjun

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Genomic heterogeneity of multiple synchronous lung cancer von Liu, Yu, Zhang, Jianjun, Li, Lin, Yin, Guangliang, Zhang, Jianhua, Zheng, Shan, Cheung, Hannah, Wu, Ning, Lu, Ning, Mao, Xizeng, Yang, Longhai, Zhang, Jiexin, Zhang, Li, Seth, Sahil, Chen, Huang, Song, Xingzhi, Liu, Kan, Xie, Yongqiang, Zhou, Lina, Zhao, Chuanduo, Han, Naijun, Chen, Wenting, Zhang, Susu, Chen, Longyun, Cai, Wenjun, Li, Lin, Shen, Miaozhong, Xu, Ningzhi, Cheng, Shujun, Yang, Huanming, Lee, J. Jack, Correa, Arlene, Fujimoto, Junya, Behrens, Carmen, Chow, Chi-Wan, William, William N., Heymach, John V., Hong, Waun Ki, Swisher, Stephen, Wistuba, Ignacio I., Wang, Jun, Lin, Dongmei, Liu, Xiangyang, Futreal, P. Andrew, Gao, Yanning

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Multi-omic molecular profiling reveals potentially targetable abnormalities shared across multiple histologies of brain metastasis von Fukumura, Kazutaka, Malgulwar, Prit Benny, Fischer, Grant M., Hu, Xiaoding, Mao, Xizeng, Song, Xingzhi, Hernandez, Sharia D., Zhang, Xiang H.-F., Zhang, Jianhua, Parra, Edwin Roger, Yu, Dihua, Debeb, Bisrat G., Davies, Michael A., Huse, Jason T.

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Telomere dysfunction activates YAP1 to drive tissue inflammation von Chakravarti, Deepavali, Hu, Baoli, Mao, Xizeng, Rashid, Asif, Li, Jiexi, Li, Jun, Liao, Wen-ting, Whitley, Elizabeth M., Dey, Prasenjit, Hou, Pingping, LaBella, Kyle A., Chang, Andrew, Wang, Guocan, Spring, Denise J., Deng, Pingna, Zhao, Di, Liang, Xin, Lan, Zhengdao, Lin, Yiyun, Sarkar, Sharmistha, Terranova, Christopher, Deribe, Yonathan Lissanu, Blutt, Sarah E., Okhuysen, Pablo, Zhang, Jianhua, Vilar, Eduardo, Nielsen, Ole Haagen, Dupont, Andrew, Younes, Mamoun, Patel, Kalyani R., Shroyer, Noah F., Rai, Kunal, Estes, Mary K., Wang, Y. Alan, Bertuch, Alison A., DePinho, Ronald A.

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Multi-modal molecular programs regulate melanoma cell state von Andrews, Miles C., Oba, Junna, Wu, Chang-Jiun, Zhu, Haifeng, Karpinets, Tatiana, Creasy, Caitlin A., Forget, Marie-Andrée, Yu, Xiaoxing, Song, Xingzhi, Mao, Xizeng, Robertson, A. Gordon, Romano, Gabriele, Li, Peng, Burton, Elizabeth M., Lu, Yiling, Sloane, Robert Szczepaniak, Wani, Khalida M., Rai, Kunal, Lazar, Alexander J., Haydu, Lauren E., Bustos, Matias A., Shen, Jianjun, Chen, Yueping, Morgan, Margaret B., Wargo, Jennifer A., Kwong, Lawrence N., Haymaker, Cara L., Grimm, Elizabeth A., Hwu, Patrick, Hoon, Dave S. B., Zhang, Jianhua, Gershenwald, Jeffrey E., Davies, Michael A., Futreal, P. Andrew, Bernatchez, Chantale, Woodman, Scott E.

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Elucidation of how cancer cells avoid acidosis through comparative transcriptomic data analysis von Xu, Kun, Mao, Xizeng, Mehta, Minesh, Cui, Juan, Zhang, Chi, Mao, Fenglou, Xu, Ying

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SEAS: a system for SEED-based pathway enrichment analysis von Mao, Xizeng, Zhang, Yu, Xu, Ying

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A comparative study of gene-expression data of basal cell carcinoma and melanoma reveals new insights about the two cancers von Xu, Kun, Mao, Xizeng, Mehta, Minesh, Cui, Juan, Zhang, Chi, Xu, Ying

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Understanding the commonalities and differences in genomic organizations across closely related bacteria from an energy perspective von Ma, Qin, Chen, Xin, Liu, Chao, Mao, XiZeng, Zhang, HanYuan, Ji, Fei, Wu, ChunGuo, Xu, Ying

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DOOR 2.0: presenting operons and their functions through dynamic and integrated views von Mao, Xizeng, Ma, Qin, Zhou, Chuan, Chen, Xin, Zhang, Hanyuan, Yang, Jincai, Mao, Fenglou, Lai, Wei, Xu, Ying

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Multiplex profiling of peritoneal metastases from gastric adenocarcinoma identified novel targets and molecular subtypes that predict treatment response von Wang, Ruiping, Song, Shumei, Harada, Kazuto, Ghazanfari Amlashi, Fatemeh, Badgwell, Brian, Pizzi, Melissa Pool, Xu, Yan, Zhao, Wei, Dong, Xiaochuan, Jin, Jiangkang, Wang, Ying, Scott, Ailing, Ma, Lang, Huo, Longfei, Vicente, Diego, Blum Murphy, Mariela, Shanbhag, Namita, Tatlonghari, Ghia, Thomas, Irene, Rogers, Jane, Kobayashi, Makoto, Vykoukal, Jody, Estrella, Jeannelyn Santiano, Roy-Chowdhuri, Sinchita, Han, Guangchun, Zhang, Shaojun, Mao, Xizeng, Song, Xingzhi, Zhang, Jianhua, Gu, Jian, Johnson, Randy L, Calin, George Adrian, Peng, Guang, Lee, Ju-Seog, Hanash, Samir M, Futreal, Andrew, Wang, Zhenning, Wang, Linghua, Ajani, Jaffer A

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High-Throughput Identification of Graft-Vs-Leukemia TCRs in AML Patient Samples after Allogeneic Stem Cell Transplantation von Tubo, Noah J, Wang, Duncheng, He, Qiuming, Chen, Yibin, Ngai, Ho, Huang, Yanqing, Kerros, Celine, Mao, Xizeng, Liang, Shoudan, Shukla, Sachet, Peris Cuesta, Arnau, Bachireddy, Pavan, Alcantara Montiel, Julio, Alatrash, Gheath, Koppikar, Priya, Molldrem, Jeffrey J.

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Isolation and analysis of differentially expressed genes in dominant genic male sterility (DGMS) Brassica napus L. using subtractive PCR and cDNA microarray von Wu, Jianyong, Shen, Junru, Mao, Xizeng, Liu, Kede, Wei, Liping, Liu, Pingwu, Yang, Guangsheng

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Combined Analysis of Antigen Presentation and T-cell Recognition Reveals Restricted Immune Responses in Melanoma von Kalaora, Shelly, Wolf, Yochai, Feferman, Tali, Barnea, Eilon, Greenstein, Erez, Reshef, Dan, Tirosh, Itay, Reuben, Alexandre, Patkar, Sushant, Levy, Ronen, Quinkhardt, Juliane, Omokoko, Tana, Qutob, Nouar, Golani, Ofra, Zhang, Jianhua, Mao, Xizeng, Song, Xingzhi, Bernatchez, Chantale, Haymaker, Cara, Forget, Marie-Andrée, Creasy, Caitlin, Greenberg, Polina, Carter, Brett W, Cooper, Zachary A, Rosenberg, Steven A, Lotem, Michal, Sahin, Ugur, Shakhar, Guy, Ruppin, Eytan, Wargo, Jennifer A, Friedman, Nir, Admon, Arie, Samuels, Yardena

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The percentage of bacterial genes on leading versus lagging strands is influenced by multiple balancing forces von Mao, Xizeng, Zhang, Han, Yin, Yanbin, Xu, Ying

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PRDM16s transforms megakaryocyte-erythroid progenitors into myeloid leukemia–initiating cells von Hu, Tianyuan, Morita, Kiyomi, Hill, Matthew C., Jiang, Yajian, Kitano, Ayumi, Saito, Yusuke, Wang, Feng, Mao, Xizeng, Hoegenauer, Kevin A., Morishita, Kazuhiro, Martin, James F., Futreal, P. Andrew, Takahashi, Koichi, Nakada, Daisuke

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Molecular Analysis of Clinically Defined Subsets of High-Grade Serous Ovarian Cancer von Lee, Sanghoon, Zhao, Li, Rojas, Christine, Bateman, Nicholas W., Yao, Hui, Lara, Olivia D., Celestino, Joseph, Morgan, Margaret B., Nguyen, Tri V., Conrads, Kelly A., Rangel, Kelly M., Dood, Robert L., Hajek, Richard A., Fawcett, Gloria L., Chu, Randy A., Wilson, Katlin, Loffredo, Jeremy L., Viollet, Coralie, Jazaeri, Amir A., Dalgard, Clifton L., Mao, Xizeng, Song, Xingzhi, Zhou, Ming, Hood, Brian L., Banskota, Nirad, Wilkerson, Matthew D., Te, Jerez, Soltis, Anthony R., Roman, Kristin, Dunn, Andrew, Cordover, David, Eterovic, Agda Karina, Liu, Jinsong, Burks, Jared K., Baggerly, Keith A., Fleming, Nicole D., Lu, Karen H., Westin, Shannon N., Coleman, Robert L., Mills, Gordon B., Casablanca, Yovanni, Zhang, Jianhua, Conrads, Thomas P., Maxwell, George L., Futreal, P. Andrew, Sood, Anil K.

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KOBAS server: a web-based platform for automated annotation and pathway identification von Wu, Jianmin, Mao, Xizeng, Cai, Tao, Luo, Jingchu, Wei, Liping

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