A multicenter study benchmarking single-cell RNA sequencing technologies using reference samples von Chen, Wanqiu, Zhao, Yongmei, Chen, Xin, Yang, Zhaowei, Xu, Xiaojiang, Bi, Yingtao, Chen, Vicky, Li, Jing, Choi, Hannah, Ernest, Ben, Tran, Bao, Mehta, Monika, Kumar, Parimal, Farmer, Andrew, Mir, Alain, Mehra, Urvashi Ann, Li, Jian-Liang, Moos, Malcolm, Xiao, Wenming, Wang, Charles

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Similarities and differences between variants called with human reference genome HG19 or HG38 von Pan, Bohu, Kusko, Rebecca, Xiao, Wenming, Zheng, Yuanting, Liu, Zhichao, Xiao, Chunlin, Sakkiah, Sugunadevi, Guo, Wenjing, Gong, Ping, Zhang, Chaoyang, Ge, Weigong, Shi, Leming, Tong, Weida, Hong, Huixiao

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Exploiting Synthetic Lethality for the Therapy of ABC Diffuse Large B Cell Lymphoma von Yang, Yibin, Shaffer, Arthur L., Emre, N.C. Tolga, Ceribelli, Michele, Zhang, Meili, Wright, George, Xiao, Wenming, Powell, John, Platig, John, Kohlhammer, Holger, Young, Ryan M., Zhao, Hong, Yang, Yandan, Xu, Weihong, Buggy, Joseph J., Balasubramanian, Sriram, Mathews, Lesley A., Shinn, Paul, Guha, Rajarshi, Ferrer, Marc, Thomas, Craig, Waldmann, Thomas A., Staudt, Louis M.

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Survival of human lymphoma cells requires B-cell receptor engagement by self-antigens von Young, Ryan M., Wu, Tianyi, Schmitz, Roland, Dawood, Moez, Xiao, Wenming, Phelan, James D., Xu, Weihong, Menard, Laurence, Meffre, Eric, Chan, Wing-Chung C., Jaffe, Elaine S., Gascoyne, Randy D., Campo, Elías, Rosenwald, Andreas, Ott, German, Delabie, Jan, Rimsza, Lisa M., Staudt, Louis M.

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A novel model of controlling PD-L1 expression in ALK+ anaplastic large cell lymphoma revealed by CRISPR screening von Zhang, Jing-Ping, Song, Zhihui, Wang, Hong-Bo, Lang, Lang, Yang, Yuan-Zhong, Xiao, Wenming, Webster, Daniel E., Wei, Wei, Barta, Stefan K., Kadin, Marshall E., Staudt, Louis M., Nakagawa, Masao, Yang, Yibin

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dnAQET: a framework to compute a consolidated metric for benchmarking quality of de novo assemblies von Yavas, Gokhan, Hong, Huixiao, Xiao, Wenming

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IRF4 addiction in multiple myeloma von Staudt, Louis M, Shaffer, Arthur L, Emre, N. C. Tolga, Lamy, Laurence, Ngo, Vu N, Wright, George, Xiao, Wenming, Powell, John, Dave, Sandeep, Yu, Xin, Zhao, Hong, Zeng, Yuxin, Chen, Bangzheng, Epstein, Joshua

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Editorial: Comprehensive profiling cancer immunity with multimodal approaches for clinical management von Chen, Geng, Shi, Yi, Xiao, Wenming, Kreil, David P

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Chronic active B-cell-receptor signalling in diffuse large B-cell lymphoma von Staudt, Louis M, Davis, R. Eric, Ngo, Vu N, Lenz, Georg, Tolar, Pavel, Young, Ryan M, Romesser, Paul B, Kohlhammer, Holger, Lamy, Laurence, Zhao, Hong, Yang, Yandan, Xu, Weihong, Shaffer, Arthur L, Wright, George, Xiao, Wenming, Powell, John, Jiang, Jian-kang, Thomas, Craig J, Rosenwald, Andreas, Ott, German, Muller-Hermelink, Hans Konrad, Gascoyne, Randy D, Connors, Joseph M, Johnson, Nathalie A, Rimsza, Lisa M, Campo, Elias, Jaffe, Elaine S, Wilson, Wyndham H, Delabie, Jan, Smeland, Erlend B, Fisher, Richard I, Braziel, Rita M, Tubbs, Raymond R, Cook, J. R, Weisenburger, Dennis D, Chan, Wing C, Pierce, Susan K

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Achieving robust somatic mutation detection with deep learning models derived from reference data sets of a cancer sample von Sahraeian, Sayed Mohammad Ebrahim, Fang, Li Tai, Karagiannis, Konstantinos, Moos, Malcolm, Smith, Sean, Santana-Quintero, Luis, Xiao, Chunlin, Colgan, Michael, Hong, Huixiao, Mohiyuddin, Marghoob, Xiao, Wenming

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Personalized genome assembly for accurate cancer somatic mutation discovery using tumor-normal paired reference samples von Xiao, Chunlin, Chen, Zhong, Chen, Wanqiu, Padilla, Cory, Colgan, Michael, Wu, Wenjun, Fang, Li-Tai, Liu, Tiantian, Yang, Yibin, Schneider, Valerie, Wang, Charles, Xiao, Wenming

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Blockade of oncogenic IκB kinase activity in diffuse large B-cell lymphoma by bromodomain and extraterminal domain protein inhibitors von Ceribelli, Michele, Kelly, Priscilla N., Shaffer, Arthur L., Wright, George W., Xiao, Wenming, Yang, Yibin, Griner, Lesley A. Mathews, Guha, Rajarshi, Shinn, Paul, Keller, Jonathan M., Liu, Dongbo, Patel, Paresma R., Ferrer, Marc, Joshi, Shivangi, Nerle, Sujata, Sandy, Peter, Normant, Emmanuel, Thomas, Craig J., Staudt, Louis M.

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The Quartet Data Portal: integration of community-wide resources for multiomics quality control von Yang, Jingcheng, Liu, Yaqing, Shang, Jun, Chen, Qiaochu, Chen, Qingwang, Ren, Luyao, Zhang, Naixin, Yu, Ying, Li, Zhihui, Song, Yueqiang, Yang, Shengpeng, Scherer, Andreas, Tong, Weida, Hong, Huixiao, Xiao, Wenming, Shi, Leming, Zheng, Yuanting

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A novel model of alternative NF-κB pathway activation in anaplastic large cell lymphoma von Wang, Hongbo, Wei, Wei, Zhang, Jing-Ping, Song, Zhihui, Li, Yangyang, Xiao, Wenming, Liu, Yijun, Zeng, Mu-Sheng, Petrus, Michael N., Thomas, Craig J., Kadin, Marshall E., Nakagawa, Masao, Waldmann, Thomas A., Yang, Yibin

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A20 and RBX1 Regulate Brentuximab Vedotin Sensitivity in Hodgkin Lymphoma Models von Wei, Wei, Lin, Yuquan, Song, Zhihui, Xiao, Wenming, Chen, Liqi, Yin, Jiejing, Zhou, Yan, Barta, Stefan K, Petrus, Michael, Waldmann, Thomas A, Yang, Yibin

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Cytokine receptor signaling is required for the survival of ALK− anaplastic large cell lymphoma, even in the presence of JAK1/STAT3 mutations von Chen, Jing, Zhang, Yong, Petrus, Michael N., Xiao, Wenming, Nicolae, Alina, Raffeld, Mark, Pittaluga, Stefania, Bamford, Richard N., Nakagawa, Masao, Ouyang, Sunny Tianyi, Epstein, Alan L., Kadin, Marshall E., Del Mistro, Annarose, Woessner, Richard, Jaffe, Elaine S., Waldmann, Thomas A.

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Essential role of the linear ubiquitin chain assembly complex and TAK1 kinase in A20 mutant Hodgkin lymphoma von Song, Zhihui, Wei, Wei, Xiao, Wenming, Al-Saleem, Essel D., Nejati, Reza, Chen, Liqi, Yin, Jiejing, Fabrizio, Joseph, Petrus, Michael N., Waldmann, Thomas A., Yang, Yibin

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Molecular subtypes of diffuse large B-cell lymphoma arise by distinct genetic pathways von Lenz, Georg, Wright, George W, Emre, N.C. Tolga, Kohlhammer, Holger, Dave, Sandeep S, Davis, R. Eric, Carty, Shannon, Lam, Lloyd T, Shaffer, A.L, Xiao, Wenming, Powell, John, Rosenwald, Andreas, Ott, German, Muller-Hermelink, Hans Konrad, Gascoyne, Randy D, Connors, Joseph M, Campo, Elias, Jaffe, Elaine S, Delabie, Jan, Smeland, Erlend B, Rimsza, Lisa M, Fisher, Richard I, Weisenburger, Dennis D, Chan, Wing C, Staudt, Louis M

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Regulation of normal B-cell differentiation and malignant B-cell survival by OCT2 von Hodson, Daniel J., Shaffer, Arthur L., Xiao, Wenming, Wright, George W., Schmitz, Roland, Phelan, James D., Yang, Yandan, Webster, Daniel E., Rui, Lixin, Kohlhammer, Holger, Nakagawa, Masao, Waldmann, Thomas A., Staudt, Louis M.

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Evaluation of somatic copy number variation detection by NGS technologies and bioinformatics tools on a hyper-diploid cancer genome von Masood, Daniall, Ren, Luyao, Nguyen, Cu, Brundu, Francesco G, Zheng, Lily, Zhao, Yongmei, Jaeger, Erich, Li, Yong, Cha, Seong Won, Halpern, Aaron, Truong, Sean, Virata, Michael, Yan, Chunhua, Chen, Qingrong, Pang, Andy, Alberto, Reyes, Xiao, Chunlin, Yang, Zhaowei, Chen, Wanqiu, Wang, Charles, Cross, Jr, Frank, Catreux, Severine, Shi, Leming, Beaver, Julia A, Xiao, Wenming, Meerzaman, Daoud M

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