Pathway paradigms revealed from the genetics of inflammatory bowel disease von Graham, Daniel B., Xavier, Ramnik J.

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Microbial genes and pathways in inflammatory bowel disease von Schirmer, Melanie, Garner, Ashley, Vlamakis, Hera, Xavier, Ramnik J.

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Inflammatory Bowel Disease as a Model for Translating the Microbiome von Huttenhower, Curtis, Kostic, Aleksandar D., Xavier, Ramnik J.

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An Integrative View of Microbiome-Host Interactions in Inflammatory Bowel Diseases von Wlodarska, Marta, Kostic, Aleksandar D., Xavier, Ramnik J.

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Human genetic variation and the gut microbiome in disease von Hall, Andrew Brantley, Tolonen, Andrew C., Xavier, Ramnik J.

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Genetics and pathogenesis of inflammatory bowel disease von Khor, Bernard, Gardet, Agnès, Xavier, Ramnik J.

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The Microbiome in Inflammatory Bowel Disease: Current Status and the Future Ahead von Kostic, Aleksandar D, Xavier, Ramnik J, Gevers, Dirk

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Advances in inflammatory bowel disease pathogenesis: linking host genetics and the microbiome von Knights, Dan, Lassen, Kara G, Xavier, Ramnik J

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CRISPR-Cas9 Knockin Mice for Genome Editing and Cancer Modeling von Platt, Randall J., Chen, Sidi, Zhou, Yang, Yim, Michael J., Swiech, Lukasz, Kempton, Hannah R., Dahlman, James E., Parnas, Oren, Eisenhaure, Thomas M., Jovanovic, Marko, Graham, Daniel B., Jhunjhunwala, Siddharth, Heidenreich, Matthias, Xavier, Ramnik J., Langer, Robert, Anderson, Daniel G., Hacohen, Nir, Regev, Aviv, Feng, Guoping, Sharp, Phillip A., Zhang, Feng

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Colon stroma mediates an inflammation-driven fibroblastic response controlling matrix remodeling and healing von Jasso, Guadalupe J, Jaiswal, Alok, Varma, Mukund, Laszewski, Tyler, Grauel, Angelo, Omar, Abdifatah, Silva, Nilsa, Dranoff, Glenn, Porter, Jeffrey A, Mansfield, Keith, Cremasco, Viviana, Regev, Aviv, Xavier, Ramnik J, Graham, Daniel B

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Structure-based protein function prediction using graph convolutional networks von Gligorijević, Vladimir, Renfrew, P. Douglas, Kosciolek, Tomasz, Leman, Julia Koehler, Berenberg, Daniel, Vatanen, Tommi, Chandler, Chris, Taylor, Bryn C., Fisk, Ian M., Vlamakis, Hera, Xavier, Ramnik J., Knight, Rob, Cho, Kyunghyun, Bonneau, Richard

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Rational design of highly active sgRNAs for CRISPR-Cas9–mediated gene inactivation von Doench, John G, Hartenian, Ella, Graham, Daniel B, Tothova, Zuzana, Hegde, Mudra, Smith, Ian, Sullender, Meagan, Ebert, Benjamin L, Xavier, Ramnik J, Root, David E

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The Dynamics of the Human Infant Gut Microbiome in Development and in Progression toward Type 1 Diabetes von Kostic, Aleksandar D., Gevers, Dirk, Siljander, Heli, Vatanen, Tommi, Hyötyläinen, Tuulia, Hämäläinen, Anu-Maaria, Peet, Aleksandr, Tillmann, Vallo, Pöhö, Päivi, Mattila, Ismo, Lähdesmäki, Harri, Franzosa, Eric A., Vaarala, Outi, de Goffau, Marcus, Harmsen, Hermie, Ilonen, Jorma, Virtanen, Suvi M., Clish, Clary B., Orešič, Matej, Huttenhower, Curtis, Knip, Mikael, Xavier, Ramnik J.

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Akkermansia muciniphila phospholipid induces homeostatic immune responses von Bae, Munhyung, Cassilly, Chelsi D., Liu, Xiaoxi, Park, Sung-Moo, Tusi, Betsabeh Khoramian, Chen, Xiangjun, Kwon, Jaeyoung, Filipčík, Pavel, Bolze, Andrew S., Liu, Zehua, Vlamakis, Hera, Graham, Daniel B., Buhrlage, Sara J., Xavier, Ramnik J., Clardy, Jon

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The Human and Mouse Enteric Nervous System at Single-Cell Resolution von Drokhlyansky, Eugene, Smillie, Christopher S., Van Wittenberghe, Nicholas, Ericsson, Maria, Griffin, Gabriel K., Eraslan, Gokcen, Dionne, Danielle, Cuoco, Michael S., Goder-Reiser, Max N., Sharova, Tatyana, Kuksenko, Olena, Aguirre, Andrew J., Boland, Genevieve M., Graham, Daniel, Rozenblatt-Rosen, Orit, Xavier, Ramnik J., Regev, Aviv

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Paneth cells secrete lysozyme via secretory autophagy during bacterial infection of the intestine von Bel, Shai, Pendse, Mihir, Wang, Yuhao, Li, Yun, Ruhn, Kelly A., Hassell, Brian, Leal, Tess, Winter, Sebastian E., Xavier, Ramnik J., Hooper, Lora V.

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Pathogen Cell-to-Cell Variability Drives Heterogeneity in Host Immune Responses von Avraham, Roi, Haseley, Nathan, Brown, Douglas, Penaranda, Cristina, Jijon, Humberto B., Trombetta, John J., Satija, Rahul, Shalek, Alex K., Xavier, Ramnik J., Regev, Aviv, Hung, Deborah T.

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Trained immunity: A program of innate immune memory in health and disease von Netea, Mihai G., Joosten, Leo A. B., Latz, Eicke, Mills, Kingston H. G., Natoli, Gioacchino, Stunnenberg, Hendrik G., O'Neill, Luke A. J., Xavier, Ramnik J.

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Novel bile acid biosynthetic pathways are enriched in the microbiome of centenarians von Sato, Yuko, Atarashi, Koji, Plichta, Damian R., Arai, Yasumichi, Sasajima, Satoshi, Kearney, Sean M., Suda, Wataru, Takeshita, Kozue, Sasaki, Takahiro, Okamoto, Shoki, Skelly, Ashwin N., Okamura, Yuki, Vlamakis, Hera, Li, Youxian, Tanoue, Takeshi, Takei, Hajime, Nittono, Hiroshi, Narushima, Seiko, Irie, Junichiro, Itoh, Hiroshi, Moriya, Kyoji, Sugiura, Yuki, Suematsu, Makoto, Moritoki, Nobuko, Shibata, Shinsuke, Littman, Dan R., Fischbach, Michael A., Uwamino, Yoshifumi, Inoue, Takashi, Honda, Akira, Hattori, Masahira, Murai, Tsuyoshi, Xavier, Ramnik J., Hirose, Nobuyoshi, Honda, Kenya

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Gut Microbiome Function Predicts Response to Anti-integrin Biologic Therapy in Inflammatory Bowel Diseases von Ananthakrishnan, Ashwin N., Luo, Chengwei, Yajnik, Vijay, Khalili, Hamed, Garber, John J., Stevens, Betsy W., Cleland, Thomas, Xavier, Ramnik J.

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