Reproducibility in systems biology modelling von Tiwari, Krishna, Kananathan, Sarubini, Roberts, Matthew G, Meyer, Johannes P, Sharif Shohan, Mohammad Umer, Xavier, Ashley, Maire, Matthieu, Zyoud, Ahmad, Men, Jinghao, Ng, Szeyi, Nguyen, Tung V N, Glont, Mihai, Hermjakob, Henning, Malik‐Sheriff, Rahuman S

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Comparison of first trimester dating methods for gestational age estimation and their implication on preterm birth classification in a North Indian cohort von Vijayram, Ramya, Damaraju, Nikhita, Xavier, Ashley, Desiraju, Bapu Koundinya, Thiruvengadam, Ramachandran, Misra, Sumit, Chopra, Shilpa, Khurana, Ashok, Wadhwa, Nitya, Rengaswamy, Raghunathan, Sinha, Himanshu, Bhatnagar, Shinjini

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BioModels—15 years of sharing computational models in life science von Malik-Sheriff, Rahuman S, Glont, Mihai, Nguyen, Tung V N, Tiwari, Krishna, Roberts, Matthew G, Xavier, Ashley, Vu, Manh T, Men, Jinghao, Maire, Matthieu, Kananathan, Sarubini, Fairbanks, Emma L, Meyer, Johannes P, Arankalle, Chinmay, Varusai, Thawfeek M, Knight-Schrijver, Vincent, Li, Lu, Dueñas-Roca, Corina, Dass, Gaurhari, Keating, Sarah M, Park, Young M, Buso, Nicola, Rodriguez, Nicolas, Hucka, Michael, Hermjakob, Henning

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Development and external validation of Indian population-specific Garbhini-GA2 model for estimating gestational age in second and third trimesters von Gadekar, Veerendra P., Damaraju, Nikhita, Xavier, Ashley, Thakur, Shambo Basu, Vijayram, Ramya, Desiraju, Bapu Koundinya, Misra, Sumit, Bhatnagar, Shinjini, Wadhwa, Nitya, Chandra Mouli Natchu, Uma, Das, Bhabatosh, Kshetrapal, Pallavi S., Sopory, Shailaja, Thiruvengadam, Ramachandran, Misra, Sumit, Sharma, Dharmendra, Sachdeva, Kanika, Singh, Amanpreet, Nair, Balakrish G., Rath, Satyajit, Bal, Vineeta, Sharma, Alka, Sharma, Sunita, Mehta, Umesh, Sindhu, Brahmdeep, Mittal, Pratima, Bharti, Rekha, Chellani, Harish, Gera, Rani, Suri, Jyotsna, Debata, Pradeep, Arya, Sugandha, Maitra, Arindam, Maiti, Tushar K., Salunke, Dinakar M., Tandon, Nikhil, Gupta, Yashdeep, Goyal, Alpesh, Hari, Smriti, Sharma K, Aparna, Rana, Anubhuti, Ramji, Siddarth, Garg, Anju, Khurana, Ashok, Tripathi, Reva, Gupta, Rakesh, Sinha, Himanshu, Rengaswamy, Raghunathan, Majumder, Partha P., Wadhwa, Nitya, Khurana, Ashok, Rathore, Swati, Abraham, Anuja, Rengaswamy, Raghunathan, Benjamin, Santosh, Cherian, Anne George, Bhatnagar, Shinjini, Thiruvengadam, Ramachandran, Sinha, Himanshu

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Additional file 2 of Comparison of first trimester dating methods for gestational age estimation and their implication on preterm birth classification in a North Indian cohort von Ramya Vijayram, Nikhita Damaraju, Xavier, Ashley, Bapu Koundinya Desiraju, Ramachandran Thiruvengadam, Misra, Sumit, Chopra, Shilpa, Khurana, Ashok, Nitya Wadhwa, Raghunathan Rengaswamy, Himanshu Sinha, Shinjini Bhatnagar

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Microbial genes and pathways in inflammatory bowel disease von Schirmer, Melanie, Garner, Ashley, Vlamakis, Hera, Xavier, Ramnik J.

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PAF1, a Molecular Regulator of Promoter-Proximal Pausing by RNA Polymerase II von Chen, Fei Xavier, Woodfin, Ashley R., Gardini, Alessandro, Rickels, Ryan A., Marshall, Stacy A., Smith, Edwin R., Shiekhattar, Ramin, Shilatifard, Ali

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Indoleacrylic Acid Produced by Commensal Peptostreptococcus Species Suppresses Inflammation von Wlodarska, Marta, Luo, Chengwei, Kolde, Raivo, d’Hennezel, Eva, Annand, John W., Heim, Cortney E., Krastel, Philipp, Schmitt, Esther K., Omar, Abdifatah S., Creasey, Elizabeth A., Garner, Ashley L., Mohammadi, Sina, O’Connell, Daniel J., Abubucker, Sahar, Arthur, Timothy D., Franzosa, Eric A., Huttenhower, Curtis, Murphy, Leon O., Haiser, Henry J., Vlamakis, Hera, Porter, Jeffrey A., Xavier, Ramnik J.

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A novel Ruminococcus gnavus clade enriched in inflammatory bowel disease patients von Hall, Andrew Brantley, Yassour, Moran, Sauk, Jenny, Garner, Ashley, Jiang, Xiaofang, Arthur, Timothy, Lagoudas, Georgia K, Vatanen, Tommi, Fornelos, Nadine, Wilson, Robin, Bertha, Madeline, Cohen, Melissa, Garber, John, Khalili, Hamed, Gevers, Dirk, Ananthakrishnan, Ashwin N, Kugathasan, Subra, Lander, Eric S, Blainey, Paul, Vlamakis, Hera, Xavier, Ramnik J, Huttenhower, Curtis

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Has Epizootic Become Enzootic? Evidence for a Fundamental Change in the Infection Dynamics of Highly Pathogenic Avian Influenza in Europe, 2021 von Pohlmann, Anne, King, Jacqueline, Fusaro, Alice, Zecchin, Bianca, Banyard, Ashley C, Brown, Ian H, Byrne, Alexander M P, Beerens, Nancy, Liang, Yuan, Heutink, Rene, Harders, Frank, James, Joe, Reid, Scott M, Hansen, Rowena D E, Lewis, Nicola S, Hjulsager, Charlotte, Larsen, Lars E, Zohari, Siamak, Anderson, Kristofer, Bröjer, Caroline, Nagy, Alexander, Savič, Vladimir, van Borm, Steven, Steensels, Mieke, Briand, Francois-Xavier, Swieton, Edyta, Smietanka, Krzysztof, Grund, Christian, Beer, Martin, Harder, Timm

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Acarbose impairs gut Bacteroides growth by targeting intracellular glucosidases von Brown, Haley A, Morris, Adeline L, Pudlo, Nicholas A, Hopkins, Ashley E, Martens, Eric C, Golob, Jonathan L, Koropatkin, Nicole M

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Worldwide Human Papillomavirus Etiology of Cervical Adenocarcinoma and Its Cofactors: Implications for Screening and Prevention von Castellsagué, Xavier, Díaz, Mireia, de Sanjosé, Silvia, Muñoz, Nubia, Herrero, Rolando, Franceschi, Silvia, Peeling, Rosanna W., Ashley, Rhoda, Smith, Jennifer S., Snijders, Peter J. F., Meijer, Chris J. L. M., Bosch, F. Xavier

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Effective climate change adaptation means supporting community autonomy von Pisor, Anne C., Basurto, Xavier, Douglass, Kristina G., Mach, Katharine J., Ready, Elspeth, Tylianakis, Jason M., Hazel, Ashley, Kline, Michelle A., Kramer, Karen L., Lansing, J. Stephen, Moritz, Mark, Smaldino, Paul E., Thornton, Thomas F., Jones, James Holland

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Metabolic reprogramming of natural killer cells in obesity limits antitumor responses von Michelet, Xavier, Dyck, Lydia, Hogan, Andrew, Loftus, Roisin M., Duquette, Danielle, Wei, Kevin, Beyaz, Semir, Tavakkoli, Ali, Foley, Cathriona, Donnelly, Raymond, O’Farrelly, Cliona, Raverdeau, Mathilde, Vernon, Ashley, Pettee, William, O’Shea, Donal, Nikolajczyk, Barbara S., Mills, Kingston H. G., Brenner, Michael B., Finlay, David, Lynch, Lydia

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Regenerative lineages and immune-mediated pruning in lung cancer metastasis von Laughney, Ashley M., Hu, Jing, Campbell, Nathaniel R., Bakhoum, Samuel F., Setty, Manu, Lavallée, Vincent-Philippe, Xie, Yubin, Masilionis, Ignas, Carr, Ambrose J., Kottapalli, Sanjay, Allaj, Viola, Mattar, Marissa, Rekhtman, Natasha, Xavier, Joao B., Mazutis, Linas, Poirier, John T., Rudin, Charles M., Pe’er, Dana, Massagué, Joan

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Roast level and brew temperature significantly affect the color of brewed coffee von Yeager, Sara E., Batali, Mackenzie E., Lim, Lik Xian, Liang, Jiexin, Han, Juliet, Thompson, Ashley N., Guinard, Jean‐Xavier, Ristenpart, William D.

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Early mucosal events promote distinct mucosal and systemic antibody responses to live attenuated influenza vaccine von Thwaites, Ryan S., Uruchurtu, Ashley S. S., Negri, Victor Augusti, Cole, Megan E., Singh, Nehmat, Poshai, Nelisa, Jackson, David, Hoschler, Katja, Baker, Tina, Scott, Ian C., Ros, Xavier Romero, Cohen, Emma Suzanne, Zambon, Maria, Pollock, Katrina M., Hansel, Trevor T., Openshaw, Peter J. M.

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Regulatory iNKT cells lack expression of the transcription factor PLZF and control the homeostasis of Treg cells and macrophages in adipose tissue von Lynch, Lydia, Michelet, Xavier, Zhang, Sai, Brennan, Patrick J, Moseman, Ashley, Lester, Chantel, Besra, Gurdyal, Vomhof-Dekrey, Emilie E, Tighe, Mike, Koay, Hui-Fern, Godfrey, Dale I, Leadbetter, Elizabeth A, Sant'Angelo, Derek B, von Andrian, Ulrich, Brenner, Michael B

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Single-cell long-read targeted sequencing reveals transcriptional variation in ovarian cancer von Byrne, Ashley, Le, Daniel, Sereti, Kostianna, Menon, Hari, Vaidya, Samir, Patel, Neha, Lund, Jessica, Xavier-Magalhães, Ana, Shi, Minyi, Liang, Yuxin, Sterne-Weiler, Timothy, Modrusan, Zora, Stephenson, William

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Sensitivity of Holocene East Antarctic productivity to subdecadal variability set by sea ice von Johnson, Katelyn M., McKay, Robert M., Etourneau, Johan, Jiménez-Espejo, Francisco J., Albot, Anya, Riesselman, Christina R., Bertler, Nancy A. N., Horgan, Huw J., Crosta, Xavier, Bendle, James, Ashley, Kate E., Yamane, Masako, Yokoyama, Yusuke, Pekar, Stephen F., Escutia, Carlota, Dunbar, Robert B.

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