Comprehensive annotation of secondary metabolite biosynthetic genes and gene clusters of Aspergillus nidulans, A. fumigatus, A. niger and A. oryzae von Inglis, Diane O, Binkley, Jonathan, Skrzypek, Marek S, Arnaud, Martha B, Cerqueira, Gustavo C, Shah, Prachi, Wymore, Farrell, Wortman, Jennifer R, Sherlock, Gavin

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A theory of learning from different domains von Ben-David, Shai, Blitzer, John, Crammer, Koby, Kulesza, Alex, Pereira, Fernando, Vaughan, Jennifer Wortman

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SER-109, an Investigational Microbiome Drug to Reduce Recurrence After Clostridioides difficile Infection: Lessons Learned From a Phase 2 Trial von McGovern, Barbara H, Ford, Christopher B, Henn, Matthew R, Pardi, Darrell S, Khanna, Sahil, Hohmann, Elizabeth L, O’Brien, Edward J, Desjardins, Christopher A, Bernardo, Patricia, Wortman, Jennifer R, Lombardo, Mary-Jane, Litcofsky, Kevin D, Winkler, Jonathan A, McChalicher, Christopher W J, Li, Sunny S, Tomlinson, Amelia D, Nandakumar, Madhumitha, Cook, David N, Pomerantz, Roger J, Auninš, John G, Trucksis, Michele

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Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments von Haas, Brian J, Salzberg, Steven L, Zhu, Wei, Pertea, Mihaela, Allen, Jonathan E, Orvis, Joshua, White, Owen, Buell, C Robin, Wortman, Jennifer R

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Pilon: an integrated tool for comprehensive microbial variant detection and genome assembly improvement von Walker, Bruce J, Abeel, Thomas, Shea, Terrance, Priest, Margaret, Abouelliel, Amr, Sakthikumar, Sharadha, Cuomo, Christina A, Zeng, Qiandong, Wortman, Jennifer, Young, Sarah K, Earl, Ashlee M

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SER-109, an Oral Microbiome Therapy for Recurrent Clostridioides difficile Infection von Feuerstadt, Paul, Louie, Thomas J, Lashner, Bret, Wang, Elaine E.L, Diao, Liyang, Bryant, Jessica A, Sims, Matthew, Kraft, Colleen S, Cohen, Stuart H, Berenson, Charles S, Korman, Louis Y, Ford, Christopher B, Litcofsky, Kevin D, Lombardo, Mary-Jane, Wortman, Jennifer R, Wu, Henry, Auniņš, John G, McChalicher, Christopher W.J, Winkler, Jonathan A, McGovern, Barbara H, Trucksis, Michele, Henn, Matthew R, von Moltke, Lisa

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Adaptive Contract Design for Crowdsourcing Markets: Bandit Algorithms for Repeated Principal-Agent Problems von Ho, Chien-Ju, Slivkins, Aleksandrs, Vaughan, Jennifer Wortman

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A Phase 1b Safety Study of SER-287, a Spore-Based Microbiome Therapeutic, for Active Mild to Moderate Ulcerative Colitis von Henn, Matthew R., O’Brien, Edward J., Diao, Liyang, Feagan, Brian G., Sandborn, William J., Huttenhower, Curtis, Wortman, Jennifer R., McGovern, Barbara H., Wang-Weigand, Sherry, Lichter, David I., Chafee, Meghan, Ford, Christopher B., Bernardo, Patricia, Zhao, Peng, Simmons, Sheri, Tomlinson, Amelia D., Cook, David N., Pomerantz, Roger J., Misra, Bharat K., Auninš, John G., Trucksis, Michele

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How do authors' perceptions of their papers compare with co-authors' perceptions and peer-review decisions? von Rastogi, Charvi, Stelmakh, Ivan, Beygelzimer, Alina, Dauphin, Yann N, Liang, Percy, Wortman Vaughan, Jennifer, Xue, Zhenyu, Daumé Iii, Hal, Pierson, Emma, Shah, Nihar B

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Genomic islands in the pathogenic filamentous fungus Aspergillus fumigatus von Fedorova, Natalie D, Khaldi, Nora, Joardar, Vinita S, Maiti, Rama, Amedeo, Paolo, Anderson, Michael J, Crabtree, Jonathan, Silva, Joana C, Badger, Jonathan H, Albarraq, Ahmed, Angiuoli, Sam, Bussey, Howard, Bowyer, Paul, Cotty, Peter J, Dyer, Paul S, Egan, Amy, Galens, Kevin, Fraser-Liggett, Claire M, Haas, Brian J, Inman, Jason M, Kent, Richard, Lemieux, Sebastien, Malavazi, Iran, Orvis, Joshua, Roemer, Terry, Ronning, Catherine M, Sundaram, Jaideep P, Sutton, Granger, Turner, Geoff, Venter, J Craig, White, Owen R, Whitty, Brett R, Youngman, Phil, Wolfe, Kenneth H, Goldman, Gustavo H, Wortman, Jennifer R, Jiang, Bo, Denning, David W, Nierman, William C

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The Aspergillus Genome Database: multispecies curation and incorporation of RNA-Seq data to improve structural gene annotations von Cerqueira, Gustavo C, Arnaud, Martha B, Inglis, Diane O, Skrzypek, Marek S, Binkley, Gail, Simison, Matt, Miyasato, Stuart R, Binkley, Jonathan, Orvis, Joshua, Shah, Prachi, Wymore, Farrell, Sherlock, Gavin, Wortman, Jennifer R

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Transcriptional regulation of chemical diversity in Aspergillus fumigatus by LaeA von Perrin, Robyn M, Fedorova, Natalie D, Bok, Jin Woo, Cramer, Robert A, Wortman, Jennifer R, Kim, H Stanley, Nierman, William C, Keller, Nancy P

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Genomic epidemiology of the Escherichia coli O104:H4 outbreaks in Europe, 2011 von Grad, Yonatan H, Lipsitch, Marc, Feldgarden, Michael, Arachchi, Harindra M, Cerqueira, Gustavo C, FitzGerald, Michael, Godfrey, Paul, Haas, Brian J, Murphy, Cheryl I, Russ, Carsten, Sykes, Sean, Walker, Bruce J, Wortman, Jennifer R, Young, Sarah, Zeng, Qiandong, Abouelleil, Amr, Bochicchio, James, Chauvin, Sara, DeSmet, Timothy, Gujja, Sharvari, McCowan, Caryn, Montmayeur, Anna, Steelman, Scott, Frimodt-Møller, Jakob, Petersen, Andreas M, Struve, Carsten, Krogfelt, Karen A, Bingen, Edouard, Weill, François-Xavier, Lander, Eric S, Nusbaum, Chad, Birren, Bruce W, Hung, Deborah T, Hanage, William P

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Sequencing of Aspergillus nidulans and comparative analysis with A. fumigatus and A. oryzae von Galagan, J.E, Calvo, S.E, Cuomo, C, Ma, L.J, Wortman, J.R, Batzoglou, S, Lee, S.I, Basturkmen, M, Spevak, C.C, Clutterbuck, J

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Comparative genomics of the neglected human malaria parasite Plasmodium vivax von Sargeant, Tobias J, Gueye, Amy H, Salzberg, Steven L, Essien, Kobby, Kooij, Taco W. A, Angiuoli, Samuel V, del Portillo, Hernando A, Gardner, Malcolm J, Nene, Vish, Korsinczky, Michael, Stoeckert, Christian J, Meyer, Esmeralda V.-S, Wortman, Jennifer R, Barnwell, John W, Yamamoto, Marcio M, Crabb, Brendan S, Ralph, Stuart A, Sullivan, Steven A, Coulson, Richard M. R, Merino, Emilio F, Bidwell, Shelby L, Adams, John H, Ren, Qinghu, Fernandez-Becerra, Carmen, Fraser-Liggett, Claire M, Kang'a, Simon, Guo, Xiang, Cheng, Qin, Crabtree, Jonathan, Hoffman, Stephen L, Silva, Joana C, Galinski, Mary R, Caler, Elisabet, Amedeo, Paolo, Paulsen, Ian, Feldblyum, Tamara V, Gilson, Paul R, White, Owen, Lorenzi, Hernan, Carlton, Jane M

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Genomics of Loa loa, a Wolbachia-free filarial parasite of humans von Desjardins, Christopher A, Cerqueira, Gustavo C, Goldberg, Jonathan M, Hotopp, Julie C Dunning, Haas, Brian J, Zucker, Jeremy, Ribeiro, José M C, Saif, Sakina, Levin, Joshua Z, Fan, Lin, Zeng, Qiandong, Russ, Carsten, Wortman, Jennifer R, Fink, Doran L, Birren, Bruce W, Nutman, Thomas B

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Evolution of Extensively Drug-Resistant Tuberculosis over Four Decades: Whole Genome Sequencing and Dating Analysis of Mycobacterium tuberculosis Isolates from KwaZulu-Natal von Cohen, Keira A, Abeel, Thomas, Manson McGuire, Abigail, Desjardins, Christopher A, Munsamy, Vanisha, Shea, Terrance P, Walker, Bruce J, Bantubani, Nonkqubela, Almeida, Deepak V, Alvarado, Lucia, Chapman, Sinéad B, Mvelase, Nomonde R, Duffy, Eamon Y, Fitzgerald, Michael G, Govender, Pamla, Gujja, Sharvari, Hamilton, Susanna, Howarth, Clinton, Larimer, Jeffrey D, Maharaj, Kashmeel, Pearson, Matthew D, Priest, Margaret E, Zeng, Qiandong, Padayatchi, Nesri, Grosset, Jacques, Young, Sarah K, Wortman, Jennifer, Mlisana, Koleka P, O'Donnell, Max R, Birren, Bruce W, Bishai, William R, Pym, Alexander S, Earl, Ashlee M

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Draft genome sequence of the oilseed species Ricinus communis von Rabinowicz, Pablo D, Chan, Agnes P, Crabtree, Jonathan, Zhao, Qi, Lorenzi, Hernan, Orvis, Joshua, Puiu, Daniela, Melake-Berhan, Admasu, Jones, Kristine M, Redman, Julia, Chen, Grace, Cahoon, Edgar B, Gedil, Melaku, Stanke, Mario, Haas, Brian J, Wortman, Jennifer R, Fraser-Liggett, Claire M, Ravel, Jacques

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Structure of the germline genome of Tetrahymena thermophila and relationship to the massively rearranged somatic genome von Hamilton, Eileen P, Kapusta, Aurélie, Huvos, Piroska E, Bidwell, Shelby L, Zafar, Nikhat, Tang, Haibao, Hadjithomas, Michalis, Krishnakumar, Vivek, Badger, Jonathan H, Caler, Elisabet V, Russ, Carsten, Zeng, Qiandong, Fan, Lin, Levin, Joshua Z, Shea, Terrance, Young, Sarah K, Hegarty, Ryan, Daza, Riza, Gujja, Sharvari, Wortman, Jennifer R, Birren, Bruce W, Nusbaum, Chad, Thomas, Jainy, Carey, Clayton M, Pritham, Ellen J, Feschotte, Cédric, Noto, Tomoko, Mochizuki, Kazufumi, Papazyan, Romeo, Taverna, Sean D, Dear, Paul H, Cassidy-Hanley, Donna M, Xiong, Jie, Miao, Wei, Orias, Eduardo, Coyne, Robert S

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Behavioral experiments on biased voting in networks von Kearns, Michael, Judd, Stephen, Tan, Jinsong, Wortman, Jennifer

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