Detecting DNA cytosine methylation using nanopore sequencing von Simpson, Jared T, Workman, Rachael E, Zuzarte, P C, David, Matei, Dursi, L J, Timp, Winston

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Nanopore sequencing detects structural variants in cancer von Norris, Alexis L., Workman, Rachael E., Fan, Yunfan, Eshleman, James R., Timp, Winston

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Targeted DNA methylation in human cells using engineered dCas9-methyltransferases von Xiong, Tina, Meister, Glenna E., Workman, Rachael E., Kato, Nathaniel C., Spellberg, Michael J., Turker, Fulya, Timp, Winston, Ostermeier, Marc, Novina, Carl D.

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Protein engineering strategies for improving the selective methylation of target CpG sites by a dCas9-directed cytosine methyltransferase in bacteria von Xiong, Tina, Rohm, Dahlia, Workman, Rachael E, Roundtree, Lauren, Novina, Carl D, Timp, Winston, Ostermeier, Marc

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A natural single-guide RNA repurposes Cas9 to autoregulate CRISPR-Cas expression von Workman, Rachael E., Pammi, Teja, Nguyen, Binh T.K., Graeff, Leonardo W., Smith, Erika, Sebald, Suzanne M., Stoltzfus, Marie J., Euler, Chad W., Modell, Joshua W.

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Anti-CRISPR proteins trigger a burst of CRISPR-Cas9 expression that enhances phage defense von Workman, Rachael E., Stoltzfus, Marie J., Keith, Nicholas C., Euler, Chad W., Bondy-Denomy, Joseph, Modell, Joshua W.

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High-quality chromosome-scale assembly of the walnut (Juglans regia L.) reference genome von Marrano, Annarita, Britton, Monica, Zaini, Paulo A, Zimin, Aleksey V, Workman, Rachael E, Puiu, Daniela, Bianco, Luca, Pierro, Erica Adele Di, Allen, Brian J, Chakraborty, Sandeep, Troggio, Michela, Leslie, Charles A, Timp, Winston, Dandekar, Abhaya, Salzberg, Steven L, Neale, David B

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Characterization of human telomerase reverse transcriptase promoter methylation and transcription factor binding in differentiated thyroid cancer cell lines von Avin, Brittany A., Wang, Yongchun, Gilpatrick, Timothy, Workman, Rachael E., Lee, Isac, Timp, Winston, Umbricht, Christopher B., Zeiger, Martha A.

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Common mycelial networks impact competition in an invasive grass von Workman, Rachael E., Cruzan, Mitchell B.

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Assembled and annotated 26.5 Gbp coast redwood genome: a resource for estimating evolutionary adaptive potential and investigating hexaploid origin von Neale, David B, Zimin, Aleksey V, Zaman, Sumaira, Scott, Alison D, Shrestha, Bikash, Workman, Rachael E, Puiu, Daniela, Allen, Brian J, Moore, Zane J, Sekhwal, Manoj K, De La Torre, Amanda R, McGuire, Patrick E, Burns, Emily, Timp, Winston, Wegrzyn, Jill L, Salzberg, Steven L

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Genomic insights into metabolic flux in hummingbirds von Gershman, Ariel, Hauck, Quinn, Dick, Morag, Jamison, Jerrica M, Tassia, Michael, Agirrezabala, Xabier, Muhammad, Saad, Ali, Raafay, Workman, Rachael E, Valle, Mikel, Wong, G William, Welch, Jr, Kenneth C, Timp, Winston

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A Reference Genome Sequence for Giant Sequoia von Scott, Alison D, Zimin, Aleksey V, Puiu, Daniela, Workman, Rachael, Britton, Monica, Zaman, Sumaira, Caballero, Madison, Read, Andrew C, Bogdanove, Adam J, Burns, Emily, Wegrzyn, Jill, Timp, Winston, Salzberg, Steven L, Neale, David B

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Metagenomic next-generation sequencing of rectal swabs for the surveillance of antimicrobial-resistant organisms on the Illumina Miseq and Oxford MinION platforms von Yee, Rebecca, Breitwieser, Florian P., Hao, Stephanie, Opene, Belita N.A., Workman, Rachael E., Tamma, Pranita D., Dien-Bard, Jennifer, Timp, Winston, Simner, Patricia J.

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Nanopore native RNA sequencing of a human poly(A) transcriptome von Workman, Rachael E., Tang, Alison D., Tang, Paul S., Jain, Miten, Tyson, John R., Razaghi, Roham, Zuzarte, Philip C., Gilpatrick, Timothy, Payne, Alexander, Quick, Joshua, Sadowski, Norah, Holmes, Nadine, de Jesus, Jaqueline Goes, Jones, Karen L., Soulette, Cameron M., Snutch, Terrance P., Loman, Nicholas, Paten, Benedict, Loose, Matthew, Simpson, Jared T., Olsen, Hugh E., Brooks, Angela N., Akeson, Mark, Timp, Winston

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A dynamic subpopulation of CRISPR–Cas overexpressers allows Streptococcus pyogenes to rapidly respond to phage von Stoltzfus, Marie J., Workman, Rachael E., Keith, Nicholas C., Modell, Joshua W.

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Single-molecule, full-length transcript sequencing provides insight into the extreme metabolism of the ruby-throated hummingbird Archilochus colubris von Workman, Rachael E, Myrka, Alexander M, Wong, G William, Tseng, Elizabeth, Welch, Jr, Kenneth C, Timp, Winston

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Multiplexed analysis of fixed tissue RNA using Ligation in situ Hybridization von Credle, Joel J, Itoh, Christopher Y, Yuan, Tiezheng, Sharma, Rajni, Scott, Erick R, Workman, Rachael E, Fan, Yunfan, Housseau, Franck, Llosa, Nicolas J, Bell, W Robert, Miller, Heather, Zhang, Sean X, Timp, Winston, Larman, H Benjamin

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Author Correction: Nanopore native RNA sequencing of a human poly(A) transcriptome von Workman, Rachael E., Tang, Alison D., Tang, Paul S., Jain, Miten, Tyson, John R., Razaghi, Roham, Zuzarte, Philip C., Gilpatrick, Timothy, Payne, Alexander, Quick, Joshua, Sadowski, Norah, Holmes, Nadine, de Jesus, Jaqueline Goes, Jones, Karen L., Soulette, Cameron M., Snutch, Terrance P., Loman, Nicholas, Paten, Benedict, Loose, Matthew, Simpson, Jared T., Olsen, Hugh E., Brooks, Angela N., Akeson, Mark, Timp, Winston

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First Draft Genome Sequence of the Pathogenic Fungus Lomentospora prolificans (Formerly Scedosporium prolificans ) von Luo, Ruibang, Zimin, Aleksey, Workman, Rachael, Fan, Yunfan, Pertea, Geo, Grossman, Nina, Wear, Maggie P, Jia, Bei, Miller, Heather, Casadevall, Arturo, Timp, Winston, Zhang, Sean X, Salzberg, Steven L

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Signal Analysis of Nanopore RNA Sequencing to Interrogate Poly(A) Tails and Post-Transcriptional Modifications von Razaghi, Roham, Gilpatrick, Timothy, Sadowski, Norah, Tang, Paul, Workman, Rachael, Simpson, Jared, Timp, Winston

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