GAGE: generally applicable gene set enrichment for pathway analysis von Luo, Weijun, Friedman, Michael S, Shedden, Kerby, Hankenson, Kurt D, Woolf, Peter J

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A gene regulatory network for root epidermis cell differentiation in Arabidopsis von Bruex, Angela, Kainkaryam, Raghunandan M, Wieckowski, Yana, Kang, Yeon Hee, Bernhardt, Christine, Xia, Yang, Zheng, Xiaohua, Wang, Jean Y, Lee, Myeong Min, Benfey, Philip, Woolf, Peter J, Schiefelbein, John

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A mechanistic model of PCR for accurate quantification of quantitative PCR data von Boggy, Gregory J, Woolf, Peter J

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Temporal dynamics of host molecular responses differentiate symptomatic and asymptomatic influenza a infection von Huang, Yongsheng, Zaas, Aimee K, Rao, Arvind, Dobigeon, Nicolas, Woolf, Peter J, Veldman, Timothy, Øien, N Christine, McClain, Micah T, Varkey, Jay B, Nicholson, Bradley, Carin, Lawrence, Kingsmore, Stephen, Woods, Christopher W, Ginsburg, Geoffrey S, Hero, 3rd, Alfred O

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Control of Mammalian Circadian Rhythm by CKIε-Regulated Proteasome-Mediated PER2 Degradation von Eide, Erik J., Woolf, Margaret F., Kang, Heeseog, Woolf, Peter, Hurst, William, Camacho, Fernando, Vielhaber, Erica L., Giovanni, Andrew, Virshup, David M.

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vProtein: identifying optimal amino acid complements from plant-based foods von Woolf, Peter J, Fu, Leeann L, Basu, Avik

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RegNetB: predicting relevant regulator-gene relationships in localized prostate tumor samples von Alvarez, Angel, Woolf, Peter J

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Learning transcriptional regulatory networks from high throughput gene expression data using continuous three-way mutual information von Luo, Weijun, Hankenson, Kurt D, Woolf, Peter J

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The transcription factor osterix (SP7) regulates BMP6-induced human osteoblast differentiation von Zhu, Fengchang, Friedman, Michael S., Luo, Weijun, Woolf, Peter, Hankenson, Kurt D.

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poolMC: smart pooling of mRNA samples in microarray experiments von Kainkaryam, Raghunandan M, Bruex, Angela, Gilbert, Anna C, Schiefelbein, John, Woolf, Peter J

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A Nonadaptive Combinatorial Group Testing Strategy to Facilitate Health Care Worker Screening during the Severe Acute Respiratory Syndrome Coronavirus-2 (SARS-CoV-2) Outbreak von McDermott, John H., Stoddard, Duncan, Woolf, Peter J., Ellingford, Jamie M., Gokhale, David, Taylor, Algy, Demain, Leigh A.M., Newman, William G., Black, Graeme

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Tissue-Specific Profiling Reveals Transcriptome Alterations in Arabidopsis Mutants Lacking Morphological Phenotypes von Simon, Marissa, Bruex, Angela, Kainkaryam, Raghunandan M., Zheng, Xiaohua, Huang, Ling, Woolf, Peter J., Schiefelbein, John

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poolHiTS: a shifted transversal design based pooling strategy for high-throughput drug screening von Kainkaryam, Raghunandan M, Woolf, Peter J

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A fuzzy logic approach to analyzing gene expression data von WOOLF, PETER J, WANG, YIXIN

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Partially observed bipartite network analysis to identify predictive connections in transcriptional regulatory networks von Alvarez, Angel, Woolf, Peter J

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Bayesian analysis of signaling networks governing embryonic stem cell fate decisions von Woolf, Peter J., Prudhomme, Wendy, Daheron, Laurence, Daley, George Q., Lauffenburger, Douglas A.

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Using mechanistic Bayesian networks to identify downstream targets of the sonic hedgehog pathway von Shah, Abhik, Tenzen, Toyoaki, McMahon, Andrew P, Woolf, Peter J

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Time series gene expression profiling and temporal regulatory pathway analysis of BMP6 induced osteoblast differentiation and mineralization von Luo, Weijun, Friedman, Michael S, Hankenson, Kurt D, Woolf, Peter J

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Self organization of membrane proteins via dimerization von Woolf, Peter J, Linderman, Jennifer J

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Bayesian network expansion identifies new ROS and biofilm regulators von Hodges, Andrew P, Dai, Dongjuan, Xiang, Zuoshuang, Woolf, Peter, Xi, Chuanwu, He, Yongqun

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