An Efficient Alignment Algorithm for Searching Simple Pseudoknots over Long Genomic Sequence von Ma, C., Wong, T. K. F., Lam, T. W., Hon, W. K., Sadakane, K., Yiu, S. M.

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ModelFinder: fast model selection for accurate phylogenetic estimates von Kalyaanamoorthy, Subha, Minh, Bui Quang, Wong, Thomas K F, von Haeseler, Arndt, Jermiin, Lars S

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Structural alignment of RNA with complex pseudoknot structure von Wong, Thomas K F, Lam, T W, Sung, Wing-Kin, Cheung, Brenda W Y, Yiu, S M

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Memory Efficient Algorithms for Structural Alignment of RNAs with Pseudoknots von Wong, T. K. F., Chiu, Y. S., Lam, T. W., Yiu, S. M.

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Mixture Models of Nucleotide Sequence Evolution that Account for Heterogeneity in the Substitution Process Across Sites and Across Lineages von Jayaswal, Vivek, Wong, Thomas K.F., Robinson, John, Poladian, Leon, Jermiin, Lars S.

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Mitochondrial DNA and trade data support multiple origins of Helicoverpa armigera (Lepidoptera, Noctuidae) in Brazil von Tay, Wee Tek, Walsh, Thomas K., Downes, Sharon, Anderson, Craig, Jermiin, Lars S., Wong, Thomas K. F., Piper, Melissa C., Chang, Ester Silva, Macedo, Isabella Barony, Czepak, Cecilia, Behere, Gajanan T., Silvie, Pierre, Soria, Miguel F., Frayssinet, Marie, Gordon, Karl H. J.

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pgHMA: Application of the heteroduplex mobility assay analysis in phylogenetics and population genetics von Li, Teng, Wong, Thomas K. F., Ranjard, Louis, Rodrigo, Allen G.

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An assembly-free method of phylogeny reconstruction using short-read sequences from pooled samples without barcodes von Wong, Thomas K F, Li, Teng, Ranjard, Louis, Wu, Steven H, Sukumaran, Jeet, Rodrigo, Allen G

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Effective machine-learning assembly for next-generation amplicon sequencing with very low coverage von Ranjard, Louis, Wong, Thomas K F, Rodrigo, Allen G

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HaploJuice : accurate haplotype assembly from a pool of sequences with known relative concentrations von Wong, Thomas K F, Ranjard, Louis, Lin, Yu, Rodrigo, Allen G

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A minimum reporting standard for multiple sequence alignments von Wong, Thomas K F, Kalyaanamoorthy, Subha, Meusemann, Karen, Yeates, David K, Misof, Bernhard, Jermiin, Lars S

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Genetic Variants of CLPP and M1AP Are Associated With Risk of Non-Small Cell Lung Cancer von Li, Xianghan, Zou, Yiran, Li, Teng, Wong, Thomas K F, Bushey, Ryan T, Campa, Michael J, Gottlin, Elizabeth B, Liu, Hongliang, Wei, Qingyi, Rodrigo, Allen, Patz, Jr, Edward F

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Computational identification of protein binding sites on RNAs using high-throughput RNA structure-probing data von Hu, Xihao, Wong, Thomas K F, Lu, Zhi John, Chan, Ting Fung, Lau, Terrence Chi Kong, Yiu, Siu Ming, Yip, Kevin Y

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Complete mitochondrial genome of the green-lipped mussel, Perna canaliculus (Mollusca: Mytiloidea), from long nanopore sequencing reads von Ranjard, Louis, Wong, Thomas K. F., Külheim, Carsten, Rodrigo, Allen G., Ragg, Norman L. C., Patel, Selina, Dunphy, Brendon J.

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Structural alignment of RNA with triple helix structure von Wong, Thomas K F, Yiu, S M

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Promoter-sharing by different genes in human genome--CPNE1 and RBM12 gene pair as an example von Yang, Wanling, Ng, Ping, Zhao, Minghui, Wong, Thomas K F, Yiu, Siu-Ming, Lau, Yu Lung

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Adjacent nucleotide dependence in ncRNA and order-1 SCFG for ncRNA identification von Wong, Thomas K F, Lam, Tak-Wah, Sung, Wing-Kin, Yiu, Siu-Ming

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RNASAlign: RNA Structural Alignment System von Wong, Thomas K. F., Wan, Kwok-Lung, Hsu, Bay-Yuan, Cheung, Brenda W. Y., Hon, Wing-Kai, Lam, Tak-Wah, Yiu, Siu-Ming

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Refining orthologue groups at the transcript level von Jia, Yizhen, Wong, Thomas K F, Song, You-Qiang, Yiu, Siu-Ming, Smith, David K

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Comparison of Cutoff Strategies for Geometrical Features in Machine Learning-Based Scoring Functions von Siu, Shirley W. I., Wong, Thomas K. F., Fong, Simon

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