glmGamPoi: fitting Gamma-Poisson generalized linear models on single cell count data von Ahlmann-Eltze, Constantin, Huber, Wolfgang

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Alternative start and termination sites of transcription drive most transcript isoform differences across human tissues von Reyes, Alejandro, Huber, Wolfgang

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Detecting differential usage of exons from RNA-seq data von Anders, Simon, Reyes, Alejandro, Huber, Wolfgang

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Data-driven hypothesis weighting increases detection power in genome-scale multiple testing von Ignatiadis, Nikolaos, Klaus, Bernd, Zaugg, Judith B, Huber, Wolfgang

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Independent filtering increases detection power for high-throughput experiments von Bourgon, Richard, Gentleman, Robert, Huber, Wolfgang

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Multi‐Omics Factor Analysis—a framework for unsupervised integration of multi‐omics data sets von Argelaguet, Ricard, Velten, Britta, Arnol, Damien, Dietrich, Sascha, Zenz, Thorsten, Marioni, John C, Buettner, Florian, Huber, Wolfgang, Stegle, Oliver

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arrayQualityMetrics—a bioconductor package for quality assessment of microarray data von Kauffmann, Audrey, Gentleman, Robert, Huber, Wolfgang

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SomaticSignatures: inferring mutational signatures from single-nucleotide variants von Gehring, Julian S, Fischer, Bernd, Lawrence, Michael, Huber, Wolfgang

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Proteome-wide identification of ubiquitin interactions using UbIA-MS von Zhang, Xiaofei, Smits, Arne H, van Tilburg, Gabrielle BA, Ovaa, Huib, Huber, Wolfgang, Vermeulen, Michiel

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gscreend: modelling asymmetric count ratios in CRISPR screens to decrease experiment size and improve phenotype detection von Imkeller, Katharina, Ambrosi, Giulia, Boutros, Michael, Huber, Wolfgang

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Software for computing and annotating genomic ranges von Lawrence, Michael, Huber, Wolfgang, Pagès, Hervé, Aboyoun, Patrick, Carlson, Marc, Gentleman, Robert, Morgan, Martin T, Carey, Vincent J

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Count-based differential expression analysis of RNA sequencing data using R and Bioconductor von Anders, Simon, McCarthy, Davis J, Chen, Yunshun, Okoniewski, Michal, Smyth, Gordon K, Huber, Wolfgang, Robinson, Mark D

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Proteome-wide solubility and thermal stability profiling reveals distinct regulatory roles for ATP von Sridharan, Sindhuja, Kurzawa, Nils, Werner, Thilo, Günthner, Ina, Helm, Dominic, Huber, Wolfgang, Bantscheff, Marcus, Savitski, Mikhail M.

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Human haematopoietic stem cell lineage commitment is a continuous process von Velten, Lars, Haas, Simon F., Raffel, Simon, Blaszkiewicz, Sandra, Islam, Saiful, Hennig, Bianca P., Hirche, Christoph, Lutz, Christoph, Buss, Eike C., Nowak, Daniel, Boch, Tobias, Hofmann, Wolf-Karsten, Ho, Anthony D., Huber, Wolfgang, Trumpp, Andreas, Essers, Marieke A. G., Steinmetz, Lars M.

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The Shh Topological Domain Facilitates the Action of Remote Enhancers by Reducing the Effects of Genomic Distances von Symmons, Orsolya, Pan, Leslie, Remeseiro, Silvia, Aktas, Tugce, Klein, Felix, Huber, Wolfgang, Spitz, François

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RNA-Seq workflow: gene-level exploratory analysis and differential expression von Love, Michael I., Anders, Simon, Kim, Vladislav, Huber, Wolfgang

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An Optogenetic Method to Modulate Cell Contractility during Tissue Morphogenesis von Guglielmi, Giorgia, Barry, Joseph D., Huber, Wolfgang, De Renzis, Stefano

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High-resolution mapping of meiotic crossovers and non-crossovers in yeast von Mancera, Eugenio, Bourgon, Richard, Brozzi, Alessandro, Huber, Wolfgang, Steinmetz, Lars M

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Thermal proteome profiling for unbiased identification of direct and indirect drug targets using multiplexed quantitative mass spectrometry von Franken, Holger, Mathieson, Toby, Childs, Dorothee, Sweetman, Gavain M A, Werner, Thilo, Tögel, Ina, Doce, Carola, Gade, Stephan, Bantscheff, Marcus, Drewes, Gerard, Reinhard, Friedrich B M, Huber, Wolfgang, Savitski, Mikhail M

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Invasive pulmonary aspergillosis in critically ill patients with severe COVID-19 pneumonia: Results from the prospective AspCOVID-19 study von Lahmer, Tobias, Kriescher, Silja, Herner, Alexander, Rothe, Kathrin, Spinner, Christoph D, Schneider, Jochen, Mayer, Ulrich, Neuenhahn, Michael, Hoffmann, Dieter, Geisler, Fabian, Heim, Markus, Schneider, Gerhard, Schmid, Roland M, Huber, Wolfgang, Rasch, Sebastian

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