COG database update: focus on microbial diversity, model organisms, and widespread pathogens von Galperin, Michael Y, Wolf, Yuri I, Makarova, Kira S, Vera Alvarez, Roberto, Landsman, David, Koonin, Eugene V

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Expanded microbial genome coverage and improved protein family annotation in the COG database von Galperin, Michael Y, Makarova, Kira S, Wolf, Yuri I, Koonin, Eugene V

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Global Organization and Proposed Megataxonomy of the Virus World von Koonin, Eugene V, Dolja, Valerian V, Krupovic, Mart, Varsani, Arvind, Wolf, Yuri I, Yutin, Natalya, Zerbini, F Murilo, Kuhn, Jens H

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Diverse enzymatic activities mediate antiviral immunity in prokaryotes von Gao, Linyi, Altae-Tran, Han, Böhning, Francisca, Makarova, Kira S, Segel, Michael, Schmid-Burgk, Jonathan L, Koob, Jeremy, Wolf, Yuri I, Koonin, Eugene V, Zhang, Feng

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Genome reduction as the dominant mode of evolution von Wolf, Yuri I., Koonin, Eugene V.

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Genomic determinants of pathogenicity in SARS-CoV-2 and other human coronaviruses von Gussow, Ayal B., Auslander, Noam, Faure, Guilhem, Wolf, Yuri I., Zhang, Feng, Koonin, Eugene V.

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Origins and Evolution of the Global RNA Virome von Wolf, Yuri I, Kazlauskas, Darius, Iranzo, Jaime, Lucía-Sanz, Adriana, Kuhn, Jens H, Krupovic, Mart, Dolja, Valerian V, Koonin, Eugene V

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Discovery and Functional Characterization of Diverse Class 2 CRISPR-Cas Systems von Shmakov, Sergey, Abudayyeh, Omar O., Makarova, Kira S., Wolf, Yuri I., Gootenberg, Jonathan S., Semenova, Ekaterina, Minakhin, Leonid, Joung, Julia, Konermann, Silvana, Severinov, Konstantin, Zhang, Feng, Koonin, Eugene V.

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Phylogenomics of prokaryotic ribosomal proteins von Yutin, Natalya, Puigbò, Pere, Koonin, Eugene V, Wolf, Yuri I

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Seeker: alignment-free identification of bacteriophage genomes by deep learning von Auslander, Noam, Gussow, Ayal B, Benler, Sean, Wolf, Yuri I, Koonin, Eugene V

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Ancient Gene Capture and Recent Gene Loss Shape the Evolution of Orthopoxvirus-Host Interaction Genes von Senkevich, Tatiana G, Yutin, Natalya, Wolf, Yuri I, Koonin, Eugene V, Moss, Bernard

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Theory of prokaryotic genome evolution von Sela, Itamar, Wolf, Yuri I., Koonin, Eugene V.

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Gene gain and loss push prokaryotes beyond the homologous recombination barrier and accelerate genome sequence divergence von Iranzo, Jaime, Wolf, Yuri I., Koonin, Eugene V., Sela, Itamar

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Microbial genome analysis: the COG approach von Galperin, Michael Y, Kristensen, David M, Makarova, Kira S, Wolf, Yuri I, Koonin, Eugene V

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Analysis of metagenome-assembled viral genomes from the human gut reveals diverse putative CrAss-like phages with unique genomic features von Yutin, Natalya, Benler, Sean, Shmakov, Sergei A., Wolf, Yuri I., Tolstoy, Igor, Rayko, Mike, Antipov, Dmitry, Pevzner, Pavel A., Koonin, Eugene V.

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Defense Islands in Bacterial and Archaeal Genomes and Prediction of Novel Defense Systems von Makarova, Kira S, Wolf, Yuri I, Snir, Sagi, Koonin, Eugene V

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Interplay between DNA damage repair and apoptosis shapes cancer evolution through aneuploidy and microsatellite instability von Auslander, Noam, Wolf, Yuri I., Koonin, Eugene V.

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Doubling of the known set of RNA viruses by metagenomic analysis of an aquatic virome von Wolf, Yuri I., Silas, Sukrit, Wang, Yongjie, Wu, Shuang, Bocek, Michael, Kazlauskas, Darius, Krupovic, Mart, Fire, Andrew, Dolja, Valerian V., Koonin, Eugene V.

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Evolution and classification of the CRISPR–Cas systems von Makarova, Kira S., Haft, Daniel H., Barrangou, Rodolphe, Brouns, Stan J. J., Charpentier, Emmanuelle, Horvath, Philippe, Moineau, Sylvain, Mojica, Francisco J. M., Wolf, Yuri I., Yakunin, Alexander F., van der Oost, John, Koonin, Eugene V.

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Eukaryotic large nucleo-cytoplasmic DNA viruses: clusters of orthologous genes and reconstruction of viral genome evolution von Yutin, Natalya, Wolf, Yuri I, Raoult, Didier, Koonin, Eugene V

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