Open complex scrunching before nucleotide addition accounts for the unusual transcription start site of E. coli ribosomal RNA promoters von Winkelman, Jared T., Chandrangsu, Pete, Ross, Wilma, Gourse, Richard L.

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Open complex DNA scrunching: A key to transcription start site selection and promoter escape von Winkelman, Jared T., Gourse, Richard L.

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XACT-Seq Comprehensively Defines the Promoter-Position and Promoter-Sequence Determinants for Initial-Transcription Pausing von Winkelman, Jared T., Pukhrambam, Chirangini, Vvedenskaya, Irina O., Zhang, Yuanchao, Taylor, Deanne M., Shah, Premal, Ebright, Richard H., Nickels, Bryce E.

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Crosslink Mapping at Amino Acid-Base Resolution Reveals the Path of Scrunched DNA in Initial Transcribing Complexes von Winkelman, Jared T., Winkelman, Bradford T., Boyce, Julian, Maloney, Michael F., Chen, Albert Y., Ross, Wilma, Gourse, Richard L.

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Combinatorial control of Pseudomonas aeruginosa biofilm development by quorum-sensing and nutrient-sensing regulators von Chen, Gong, Fanouraki, Georgia, Anandhi Rangarajan, Aathmaja, Winkelman, Bradford T, Winkelman, Jared T, Waters, Christopher M, Mukherjee, Sampriti

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The mechanism of variability in transcription start site selection von Yu, Libing, Winkelman, Jared T, Pukhrambam, Chirangini, Strick, Terence R, Nickels, Bryce E, Ebright, Richard H

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RemA (YlzA) and RemB (YaaB) Regulate Extracellular Matrix Operon Expression and Biofilm Formation in Bacillus subtilis von WINKELMAN, Jared T, BLAIR, Kris M, KEARNS, Daniel B

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Stepwise Promoter Melting by Bacterial RNA Polymerase von Chen, James, Chiu, Courtney, Gopalkrishnan, Saumya, Chen, Albert Y., Olinares, Paul Dominic B., Saecker, Ruth M., Winkelman, Jared T., Maloney, Michael F., Chait, Brian T., Ross, Wilma, Gourse, Richard L., Campbell, Elizabeth A., Darst, Seth A.

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6S RNA Mimics B-Form DNA to Regulate Escherichia coli RNA Polymerase von Chen, James, Wassarman, Karen M., Feng, Shili, Leon, Katherine, Feklistov, Andrey, Winkelman, Jared T., Li, Zongli, Walz, Thomas, Campbell, Elizabeth A., Darst, Seth A.

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Molecular Clutch Disables Flagella in the Bacillus subtilis Biofilm von Blair, Kris M, Turner, Linda, Winkelman, Jared T, Berg, Howard C, Kearns, Daniel B

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Structural and mechanistic basis of reiterative transcription initiation von Liu, Yu, Yu, Libing, Pukhrambam, Chirangini, Winkelman, Jared T, Firlar, Emre, Kaelber, Jason T, Zhang, Yu, Nickels, Bryce E, Ebright, Richard H

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Structural and mechanistic basis of σ-dependent transcriptional pausing von Pukhrambam, Chirangini, Molodtsov, Vadim, Kooshkbaghi, Mahdi, Tareen, Ammar, Vu, Hoa, Skalenko, Kyle S, Su, Min, Yin, Zhou, Winkelman, Jared T, Kinney, Justin B, Ebright, Richard H, Nickels, Bryce E

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Multiplexed protein-DNA cross-linking: Scrunching in transcription start site selection von Winkelman, Jared T., Vvedenskaya, Irina O., Zhang, Yuanchao, Zhang, Yu, Bird, Jeremy G., Taylor, Deanne M., Gourse, Richard L., Ebright, Richard H., Nickels, Bryce E.

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Promoter-sequence determinants and structural basis of primer-dependent transcription initiation in Escherichia coli von Skalenko, Kyle S., Li, Lingting, Zhang, Yuanchao, Vvedenskaya, Irina O., Winkelman, Jared T., Cope, Alexander L., Taylor, Deanne M., Shah, Premal, Ebright, Richard H., Kinney, Justin B., Zhang, Yu, Nickels, Bryce E.

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RemA is a DNA‐binding protein that activates biofilm matrix gene expression in Bacillus subtilis von Winkelman, Jared T., Bree, Anna C., Bate, Ashley R., Eichenberger, Patrick, Gourse, Richard L., Kearns, Daniel B.

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Structures of the RNA polymerase-σ 54 reveal new and conserved regulatory strategies von Yang, Yun, Darbari, Vidya C, Zhang, Nan, Lu, Duo, Glyde, Robert, Wang, Yi-Ping, Winkelman, Jared T, Gourse, Richard L, Murakami, Katsuhiko S, Buck, Martin, Zhang, Xiaodong

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Multiplexed protein-DNA crosslinking: scrunching in transcription start site selection von Winkelman, Jared T., Vvedenskaya, Irina O., Zhang, Yuanchao, Zhang, Yu, Bird, Jeremy G., Taylor, Deanne M., Gourse, Richard L., Ebright, Richard H., Nickels, Bryce E.

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Structures of the RNA polymerase-σ54reveal new and conserved regulatory strategies von Yang, Yun, Darbari, Vidya C., Zhang, Nan, Lu, Duo, Glyde, Robert, Wang, Yi-Ping, Winkelman, Jared T., Gourse, Richard L., Murakami, Katsuhiko S., Buck, Martin, Zhang, Xiaodong

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Structures of the RNA polymerase-[sigma]54 reveal new and conserved regulatory strategies von Yang, Yun, Darbari, Vidya C, Zhang, Nan, Lu, Duo, Glyde, Robert, Wang, Yi-Ping, Winkelman, Jared T, Gourse, Richard L, Murakami, Katsuhiko S, Buck, Martin, Zhang, Xiaodong

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RemA is a DNA ‐binding protein that activates biofilm matrix gene expression in B acillus subtilis von Winkelman, Jared T., Bree, Anna C., Bate, Ashley R., Eichenberger, Patrick, Gourse, Richard L., Kearns, Daniel B.

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