Rule-Based Design of Plant Expression Vectors Using GenoCAD von Coll, Anna, Wilson, Mandy L, Gruden, Kristina, Peccoud, Jean

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Data-driven mechanistic framework with stratified immunity and effective transmissibility for COVID-19 scenario projections von Porebski, Przemyslaw, Venkatramanan, Srinivasan, Adiga, Aniruddha, Klahn, Brian, Hurt, Benjamin, Wilson, Mandy L., Chen, Jiangzhuo, Vullikanti, Anil, Marathe, Madhav, Lewis, Bryan

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EpiViewer: an epidemiological application for exploring time series data von Thorve, Swapna, Wilson, Mandy L, Lewis, Bryan L, Swarup, Samarth, Vullikanti, Anil Kumar S, Marathe, Madhav V

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Correction: Rule-Based Design of Plant Expression Vectors Using GenoCAD von Coll, Anna, Wilson, Mandy L, Gruden, Kristina, Peccoud, Jean

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GenoCAD for iGEM: a grammatical approach to the design of standard-compliant constructs von Cai, Yizhi, Wilson, Mandy L, Peccoud, Jean

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The Synthetic Biology Open Language (SBOL) provides a community standard for communicating designs in synthetic biology von Galdzicki, Michal, Clancy, Kevin P, Oberortner, Ernst, Pocock, Matthew, Quinn, Jacqueline Y, Rodriguez, Cesar A, Roehner, Nicholas, Wilson, Mandy L, Adam, Laura, Anderson, J Christopher, Bartley, Bryan A, Beal, Jacob, Chandran, Deepak, Chen, Joanna, Densmore, Douglas, Endy, Drew, Grünberg, Raik, Hallinan, Jennifer, Hillson, Nathan J, Johnson, Jeffrey D, Kuchinsky, Allan, Lux, Matthew, Misirli, Goksel, Peccoud, Jean, Plahar, Hector A, Sirin, Evren, Stan, Guy-Bart, Villalobos, Alan, Wipat, Anil, Gennari, John H, Myers, Chris J, Sauro, Herbert M

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Novel multi-cluster workflow system to support real-time HPC-enabled epidemic science: Investigating the impact of vaccine acceptance on COVID-19 spread von Bhattacharya, Parantapa, Machi, Dustin, Chen, Jiangzhuo, Hoops, Stefan, Lewis, Bryan, Mortveit, Henning, Venkatramanan, Srinivasan, Wilson, Mandy L., Marathe, Achla, Porebski, Przemyslaw, Klahn, Brian, Outten, Joseph, Vullikanti, Anil, Xie, Dawen, Adiga, Abhijin, Brown, Shawn, Barrett, Christopher, Marathe, Madhav

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Multimodeling approach to evaluating the efficacy of layering pharmaceutical and nonpharmaceutical interventions for influenza pandemics von Prasad, Pragati V, Steele, Molly K, Reed, Carrie, Meyers, Lauren Ancel, Du, Zhanwei, Pasco, Remy, Alfaro-Murillo, Jorge A, Lewis, Bryan, Venkatramanan, Srinivasan, Schlitt, James, Chen, Jiangzhuo, Orr, Mark, Wilson, Mandy L, Eubank, Stephen, Wang, Lijing, Chinazzi, Matteo, Pastore Y Piontti, Ana, Davis, Jessica T, Halloran, M Elizabeth, Longini, Ira, Vespignani, Alessandro, Pei, Sen, Galanti, Marta, Kandula, Sasikiran, Shaman, Jeffrey, Haw, David J, Arinaminpathy, Nimalan, Biggerstaff, Matthew

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Data-driven scalable pipeline using national agent-based models for real-time pandemic response and decision support von Bhattacharya, Parantapa, Chen, Jiangzhuo, Hoops, Stefan, Machi, Dustin, Lewis, Bryan, Venkatramanan, Srinivasan, Wilson, Mandy L., Klahn, Brian, Adiga, Aniruddha, Hurt, Benjamin, Outten, Joseph, Adiga, Abhijin, Warren, Andrew, Baek, Young Yun, Porebski, Przemyslaw, Marathe, Achla, Xie, Dawen, Swarup, Samarth, Vullikanti, Anil, Mortveit, Henning, Eubank, Stephen, Barrett, Christopher L., Marathe, Madhav

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Disparities in spread and control of influenza in slums of Delhi: findings from an agent-based modelling study von Adiga, Abhijin, Chu, Shuyu, Eubank, Stephen, Kuhlman, Christopher J, Lewis, Bryan, Marathe, Achla, Marathe, Madhav, Nordberg, Eric K, Swarup, Samarth, Vullikanti, Anil, Wilson, Mandy L

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GenoLIB: a database of biological parts derived from a library of common plasmid features von Adames, Neil R, Wilson, Mandy L, Fang, Gang, Lux, Matthew W, Glick, Benjamin S, Peccoud, Jean

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Epihiper—A high performance computational modeling framework to support epidemic science von Chen, Jiangzhuo, Hoops, Stefan, Mortveit, Henning S, Lewis, Bryan L, Machi, Dustin, Bhattacharya, Parantapa, Venkatramanan, Srinivasan, Wilson, Mandy L, Barrett, Chris L, Marathe, Madhav V

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GenoCAD Plant Grammar to Design Plant Expression Vectors for Promoter Analysis von Coll, Anna, Wilson, Mandy L., Gruden, Kristina, Peccoud, Jean

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Development of a domain-specific genetic language to design Chlamydomonas reinhardtii expression vectors von Wilson, Mandy L, Okumoto, Sakiko, Adam, Laura, Peccoud, Jean

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Combining Participatory Influenza Surveillance with Modeling and Forecasting: Three Alternative Approaches von Brownstein, John S, Chu, Shuyu, Marathe, Achla, Marathe, Madhav V, Nguyen, Andre T, Paolotti, Daniela, Perra, Nicola, Perrotta, Daniela, Santillana, Mauricio, Swarup, Samarth, Tizzoni, Michele, Vespignani, Alessandro, Vullikanti, Anil Kumar S, Wilson, Mandy L, Zhang, Qian

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Strengths and limitations of the federal guidance on synthetic DNA von Adam, Laura, Kozar, Michael, Letort, Gaelle, Mirat, Olivier, Srivastava, Arunima, Stewart, Tyler, Wilson, Mandy L, Peccoud, Jean

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A Step-by-Step Introduction to Rule-Based Design of Synthetic Genetic Constructs Using GenoCAD von Wilson, Mandy L., Hertzberg, Russell, Adam, Laura, Peccoud, Jean

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Sequence verification of synthetic DNA by assembly of sequencing reads von Wilson, Mandy L, Cai, Yizhi, Hanlon, Regina, Taylor, Samantha, Chevreux, Bastien, Setubal, João C, Tyler, Brett M, Peccoud, Jean

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A High-Resolution, US-scale Digital Similar of Interacting Livestock, Wild Birds, and Human Ecosystems with Applications to Multi-host Epidemic Spread von Adiga, Abhijin, Chopra, Ayush, Wilson, Mandy L, Ravi, S. S, Xie, Dawen, Swarup, Samarth, Lewis, Bryan, Raskar, Ramesh, Marathe, Madhav V

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Value-based Resource Matching with Fairness Criteria: Application to Agricultural Water Trading von Adiga, Abhijin, Trabelsi, Yohai, Ferdousi, Tanvir, Marathe, Madhav, Ravi, S. S, Swarup, Samarth, Vullikanti, Anil Kumar, Wilson, Mandy L, Kraus, Sarit, Basu, Reetwika, Savalkar, Supriya, Yourek, Matthew, Brady, Michael, Rajagopalan, Kirti, Yoder, Jonathan

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