ENCODE data in the UCSC Genome Browser: year 5 update von Rosenbloom, Kate R, Sloan, Cricket A, Malladi, Venkat S, Dreszer, Timothy R, Learned, Katrina, Kirkup, Vanessa M, Wong, Matthew C, Maddren, Morgan, Fang, Ruihua, Heitner, Steven G, Lee, Brian T, Barber, Galt P, Harte, Rachel A, Diekhans, Mark, Long, Jeffrey C, Wilder, Steven P, Zweig, Ann S, Karolchik, Donna, Kuhn, Robert M, Haussler, David, Kent, W James

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Integrative annotation of chromatin elements from ENCODE data von Hoffman, Michael M, Ernst, Jason, Wilder, Steven P, Kundaje, Anshul, Harris, Robert S, Libbrecht, Max, Giardine, Belinda, Ellenbogen, Paul M, Bilmes, Jeffrey A, Birney, Ewan, Hardison, Ross C, Dunham, Ian, Kellis, Manolis, Noble, William Stafford

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WiggleTools: parallel processing of large collections of genome-wide datasets for visualization and statistical analysis von Zerbino, Daniel R, Johnson, Nathan, Juettemann, Thomas, Wilder, Steven P, Flicek, Paul

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Nutrigenomics of high fat diet induced obesity in mice suggests relationships between susceptibility to fatty liver disease and the proteasome von Waller-Evans, Helen, Hue, Christophe, Fearnside, Jane, Rothwell, Alice R, Lockstone, Helen E, Caldérari, Sophie, Wilder, Steven P, Cazier, Jean-Baptiste, Scott, James, Gauguier, Dominique

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The ensembl regulatory build von Zerbino, Daniel R, Wilder, Steven P, Johnson, Nathan, Juettemann, Thomas, Flicek, Paul R

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Phylometabonomic patterns of adaptation to high fat diet feeding in inbred mice von Fearnside, Jane F, Dumas, Marc-Emmanuel, Rothwell, Alice R, Wilder, Steven P, Cloarec, Olivier, Toye, Ayo, Blancher, Christine, Holmes, Elaine, Tatoud, Roger, Barton, Richard H, Scott, James, Nicholson, Jeremy K, Gauguier, Dominique

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Lineage-Specific Genome Architecture Links Enhancers and Non-coding Disease Variants to Target Gene Promoters von Javierre, Biola M., Burren, Oliver S., Wilder, Steven P., Kreuzhuber, Roman, Hill, Steven M., Sewitz, Sven, Cairns, Jonathan, Wingett, Steven W., Várnai, Csilla, Thiecke, Michiel J., Burden, Frances, Farrow, Samantha, Cutler, Antony J., Rehnström, Karola, Downes, Kate, Grassi, Luigi, Kostadima, Myrto, Freire-Pritchett, Paula, Wang, Fan, Martens, Joost H., Kim, Bowon, Sharifi, Nilofar, Janssen-Megens, Eva M., Yaspo, Marie-Laure, Linser, Matthias, Kovacsovics, Alexander, Clarke, Laura, Richardson, David, Datta, Avik, Flicek, Paul, Stunnenberg, Hendrik G., Todd, John A., Zerbino, Daniel R., Stegle, Oliver, Ouwehand, Willem H., Frontini, Mattia, Wallace, Chris, Spivakov, Mikhail, Fraser, Peter

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Adaptive expression of microRNA-125a in adipose tissue in response to obesity in mice and men von Diawara, Malika R, Hue, Christophe, Wilder, Steven P, Venteclef, Nicolas, Aron-Wisnewsky, Judith, Scott, James, Clément, Karine, Gauguier, Dominique, Calderari, Sophie

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Direct quantitative trait locus mapping of mammalian metabolic phenotypes in diabetic and normoglycemic rat models von Nicholson, Jeremy K, Wallis, Robert H, Baunsgaard, Dorrit, Sidelmann, Ulla Grove, Keun, Hector C, Gauguier, Dominique, Barton, Richard H, D'Amato, Lisa, Dumas, Marc-Emmanuel, Blancher, Christine, Wilder, Steven P, Argoud, Karène, Bihoreau, Marie-Thérèse, Fearnside, Jane F, Scott, James

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Ensembl 2016 von Yates, Andrew, Akanni, Wasiu, Amode, M Ridwan, Barrell, Daniel, Billis, Konstantinos, Carvalho-Silva, Denise, Cummins, Carla, Clapham, Peter, Fitzgerald, Stephen, Gil, Laurent, Girón, Carlos García, Gordon, Leo, Hourlier, Thibaut, Hunt, Sarah E, Janacek, Sophie H, Johnson, Nathan, Juettemann, Thomas, Keenan, Stephen, Lavidas, Ilias, Martin, Fergal J, Maurel, Thomas, McLaren, William, Murphy, Daniel N, Nag, Rishi, Nuhn, Michael, Parker, Anne, Patricio, Mateus, Pignatelli, Miguel, Rahtz, Matthew, Riat, Harpreet Singh, Sheppard, Daniel, Taylor, Kieron, Thormann, Anja, Vullo, Alessandro, Wilder, Steven P, Zadissa, Amonida, Birney, Ewan, Harrow, Jennifer, Muffato, Matthieu, Perry, Emily, Ruffier, Magali, Spudich, Giulietta, Trevanion, Stephen J, Cunningham, Fiona, Aken, Bronwen L, Zerbino, Daniel R, Flicek, Paul

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Ensembl 2017 von Aken, Bronwen L, Achuthan, Premanand, Akanni, Wasiu, Amode, M Ridwan, Bernsdorff, Friederike, Bhai, Jyothish, Billis, Konstantinos, Carvalho-Silva, Denise, Cummins, Carla, Clapham, Peter, Gil, Laurent, Girón, Carlos García, Gordon, Leo, Hourlier, Thibaut, Hunt, Sarah E, Janacek, Sophie H, Juettemann, Thomas, Keenan, Stephen, Laird, Matthew R, Lavidas, Ilias, Maurel, Thomas, McLaren, William, Moore, Benjamin, Murphy, Daniel N, Nag, Rishi, Newman, Victoria, Nuhn, Michael, Ong, Chuang Kee, Parker, Anne, Patricio, Mateus, Riat, Harpreet Singh, Sheppard, Daniel, Sparrow, Helen, Taylor, Kieron, Thormann, Anja, Vullo, Alessandro, Walts, Brandon, Wilder, Steven P, Zadissa, Amonida, Kostadima, Myrto, Martin, Fergal J, Muffato, Matthieu, Perry, Emily, Ruffier, Magali, Staines, Daniel M, Trevanion, Stephen J, Cunningham, Fiona, Yates, Andrew, Zerbino, Daniel R, Flicek, Paul

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Ensembl 2015 von Cunningham, Fiona, Amode, M Ridwan, Barrell, Daniel, Beal, Kathryn, Billis, Konstantinos, Brent, Simon, Carvalho-Silva, Denise, Clapham, Peter, Coates, Guy, Fitzgerald, Stephen, Gil, Laurent, Girón, Carlos García, Gordon, Leo, Hourlier, Thibaut, Hunt, Sarah E, Janacek, Sophie H, Johnson, Nathan, Juettemann, Thomas, Kähäri, Andreas K, Keenan, Stephen, Martin, Fergal J, Maurel, Thomas, McLaren, William, Murphy, Daniel N, Nag, Rishi, Overduin, Bert, Parker, Anne, Patricio, Mateus, Perry, Emily, Pignatelli, Miguel, Riat, Harpreet Singh, Sheppard, Daniel, Taylor, Kieron, Thormann, Anja, Vullo, Alessandro, Wilder, Steven P, Zadissa, Amonida, Aken, Bronwen L, Birney, Ewan, Harrow, Jennifer, Kinsella, Rhoda, Muffato, Matthieu, Ruffier, Magali, Searle, Stephen M J, Spudich, Giulietta, Trevanion, Stephen J, Yates, Andy, Zerbino, Daniel R, Flicek, Paul

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Ensembl 2014 von Flicek, Paul, Amode, M Ridwan, Barrell, Daniel, Beal, Kathryn, Billis, Konstantinos, Brent, Simon, Carvalho-Silva, Denise, Clapham, Peter, Coates, Guy, Fitzgerald, Stephen, Gil, Laurent, Girón, Carlos García, Gordon, Leo, Hourlier, Thibaut, Hunt, Sarah, Johnson, Nathan, Juettemann, Thomas, Kähäri, Andreas K, Keenan, Stephen, Kulesha, Eugene, Martin, Fergal J, Maurel, Thomas, McLaren, William M, Murphy, Daniel N, Nag, Rishi, Overduin, Bert, Pignatelli, Miguel, Pritchard, Bethan, Pritchard, Emily, Riat, Harpreet S, Ruffier, Magali, Sheppard, Daniel, Taylor, Kieron, Thormann, Anja, Trevanion, Stephen J, Vullo, Alessandro, Wilder, Steven P, Wilson, Mark, Zadissa, Amonida, Aken, Bronwen L, Birney, Ewan, Cunningham, Fiona, Harrow, Jennifer, Herrero, Javier, Hubbard, Tim J P, Kinsella, Rhoda, Muffato, Matthieu, Parker, Anne, Spudich, Giulietta, Yates, Andy, Zerbino, Daniel R, Searle, Stephen M J

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Ensembl 2013 von Flicek, Paul, Ahmed, Ikhlak, Amode, M Ridwan, Barrell, Daniel, Beal, Kathryn, Brent, Simon, Carvalho-Silva, Denise, Clapham, Peter, Coates, Guy, Fairley, Susan, Fitzgerald, Stephen, Gil, Laurent, García-Girón, Carlos, Gordon, Leo, Hourlier, Thibaut, Hunt, Sarah, Juettemann, Thomas, Kähäri, Andreas K, Keenan, Stephen, Komorowska, Monika, Kulesha, Eugene, Longden, Ian, Maurel, Thomas, McLaren, William M, Muffato, Matthieu, Nag, Rishi, Overduin, Bert, Pignatelli, Miguel, Pritchard, Bethan, Pritchard, Emily, Riat, Harpreet Singh, Ritchie, Graham R S, Ruffier, Magali, Schuster, Michael, Sheppard, Daniel, Sobral, Daniel, Taylor, Kieron, Thormann, Anja, Trevanion, Stephen, White, Simon, Wilder, Steven P, Aken, Bronwen L, Birney, Ewan, Cunningham, Fiona, Dunham, Ian, Harrow, Jennifer, Herrero, Javier, Hubbard, Tim J P, Johnson, Nathan, Kinsella, Rhoda, Parker, Anne, Spudich, Giulietta, Yates, Andy, Zadissa, Amonida, Searle, Stephen M J

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ATR-X Syndrome Protein Targets Tandem Repeats and Influences Allele-Specific Expression in a Size-Dependent Manner von Law, Martin J., Lower, Karen M., Voon, Hsiao P.J., Hughes, Jim R., Garrick, David, Viprakasit, Vip, Mitson, Matthew, De Gobbi, Marco, Marra, Marco, Morris, Andrew, Abbott, Aaron, Wilder, Steven P., Taylor, Stephen, Santos, Guilherme M., Cross, Joe, Ayyub, Helena, Jones, Steven, Ragoussis, Jiannis, Rhodes, Daniela, Dunham, Ian, Higgs, Douglas R., Gibbons, Richard J.

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Polygenic Control of Idiopathic Generalized Epilepsy Phenotypes in the Genetic Absence Rats from Strasbourg (GAERS) von Rudolf, Gabrielle, Thérèse Bihoreau, Marie, F. Godfrey, Richard, P. Wilder, Steven, D. Cox, Roger, Lathrop, Mark, Marescaux, Christian, Gauguier, Dominique

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Transcriptome Profiling in Rat Inbred Strains and Experimental Cross Reveals Discrepant Genetic Architecture of Genome-Wide Gene Expression von Kaisaki, Pamela J, Otto, Georg W, Argoud, Karène, Collins, Stephan C, Wallis, Robert H, Wilder, Steven P, Yau, Anthony C Y, Hue, Christophe, Calderari, Sophie, Bihoreau, Marie-Thérèse, Cazier, Jean-Baptiste, Mott, Richard, Gauguier, Dominique

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Polymorphisms in Type II SH2 Domain–Containing Inositol 5-Phosphatase (INPPL1, SHIP2) Are Associated With Physiological Abnormalities of the Metabolic Syndrome von KAISAKI, Pamela J, DELEPINE, Marc, SCHURMANS, Stéphane, LEVY, Jonathan C, LATHROP, Mark, FARRALL, Martin, GAUGUIER, Dominique, WORN, Peng Y, SEBAG-MONTEFIORE, Liam, WILDER, Steven P, MENZEL, Stephan, VIONNET, Nathalie, MARION, Evelyne, RIVELINE, Jean-Pierre, CHARPENTIER, Guillaume

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Pathophysiological, genetic and gene expression features of a novel rodent model of the cardio-metabolic syndrome von Wallis, Robert H, Collins, Stephan C, Kaisaki, Pamela J, Argoud, Karène, Wilder, Steven P, Wallace, Karin J, Ria, Massimiliano, Ktorza, Alain, Rorsman, Patrik, Bihoreau, Marie-Thérèse, Gauguier, Dominique

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Ensembl's 10th year von Flicek, Paul, Aken, Bronwen L, Ballester, Benoit, Beal, Kathryn, Bragin, Eugene, Brent, Simon, Chen, Yuan, Clapham, Peter, Coates, Guy, Fairley, Susan, Fitzgerald, Stephen, Fernandez-Banet, Julio, Gordon, Leo, Gräf, Stefan, Haider, Syed, Hammond, Martin, Howe, Kerstin, Jenkinson, Andrew, Johnson, Nathan, Kähäri, Andreas, Keefe, Damian, Keenan, Stephen, Kinsella, Rhoda, Kokocinski, Felix, Koscielny, Gautier, Kulesha, Eugene, Lawson, Daniel, Longden, Ian, Massingham, Tim, McLaren, William, Megy, Karine, Overduin, Bert, Pritchard, Bethan, Rios, Daniel, Ruffier, Magali, Schuster, Michael, Slater, Guy, Smedley, Damian, Spudich, Giulietta, Tang, Y. Amy, Trevanion, Stephen, Vilella, Albert, Vogel, Jan, White, Simon, Wilder, Steven P, Zadissa, Amonida, Birney, Ewan, Cunningham, Fiona, Dunham, Ian, Durbin, Richard, Fernández-Suarez, Xosé M, Herrero, Javier, Hubbard, Tim J.P, Parker, Anne, Proctor, Glenn, Smith, James, Searle, Stephen M.J

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