Evaluation of algorithm performance in ChIP-seq peak detection von Wilbanks, Elizabeth G, Facciotti, Marc T

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Primer selection impacts specific population abundances but not community dynamics in a monthly time‐series 16S rRNA gene amplicon analysis of coastal marine bacterioplankton von Wear, Emma K., Wilbanks, Elizabeth G., Nelson, Craig E., Carlson, Craig A.

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Candidatus Frankia Datiscae Dg1, the Actinobacterial Microsymbiont of Datisca glomerata, Expresses the Canonical nod Genes nodABC in Symbiosis with Its Host Plant von Persson, Tomas, Battenberg, Kai, Demina, Irina V, Vigil-Stenman, Theoden, Vanden Heuvel, Brian, Pujic, Petar, Facciotti, Marc T, Wilbanks, Elizabeth G, O'Brien, Anna, Fournier, Pascale, Cruz Hernandez, Maria Antonia, Mendoza Herrera, Alberto, Médigue, Claudine, Normand, Philippe, Pawlowski, Katharina, Berry, Alison M

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Host-associated microbiomes drive structure and function of marine ecosystems von Wilkins, Laetitia G E, Leray, Matthieu, O'Dea, Aaron, Yuen, Benedict, Peixoto, Raquel S, Pereira, Tiago J, Bik, Holly M, Coil, David A, Duffy, J Emmett, Herre, Edward Allen, Lessios, Harilaos A, Lucey, Noelle M, Mejia, Luis C, Rasher, Douglas B, Sharp, Koty H, Sogin, Emilia M, Thacker, Robert W, Vega Thurber, Rebecca, Wcislo, William T, Wilbanks, Elizabeth G, Eisen, Jonathan A

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Horizontal Gene Transfer and CRISPR Targeting Drive Phage-Bacterial Host Interactions and Coevolution in "Pink Berry" Marine Microbial Aggregates von Kosmopoulos, James C, Campbell, Danielle E, Whitaker, Rachel J, Wilbanks, Elizabeth G

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Targeted hypermutation of putative antigen sensors in multicellular bacteria von Doré, H, Eisenberg, A R, Junkins, E N, Leventhal, G E, Ganesh, Anakha, Cordero, O X, Paul, B G, Valentine, D L, O'Malley, M A, Wilbanks, E G

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Metagenomic methylation patterns resolve bacterial genomes of unusual size and structural complexity von Wilbanks, Elizabeth G., Doré, Hugo, Ashby, Meredith H., Heiner, Cheryl, Roberts, Richard J., Eisen, Jonathan A.

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Microscale sulfur cycling in the phototrophic pink berry consortia of the Sippewissett Salt Marsh von Wilbanks, Elizabeth G., Jaekel, Ulrike, Salman, Verena, Humphrey, Parris T., Eisen, Jonathan A., Facciotti, Marc T., Buckley, Daniel H., Zinder, Stephen H., Druschel, Gregory K., Fike, David A., Orphan, Victoria J.

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Thioclava electrotropha sp. nov., a versatile electrode and sulfur-oxidizing bacterium from marine sediments von Chang, Rachel, Bird, Lina, Barr, Casey, Osburn, Magdalena, Wilbanks, Elizabeth, Nealson, Kenneth, Rowe, Annette

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Pink berry lightsheet autoflurorescence von Wilbanks, Elizabeth

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A Monte Carlo-based framework enhances the discovery and interpretation of regulatory sequence motifs von Seitzer, Phillip, Wilbanks, Elizabeth G, Larsen, David J, Facciotti, Marc T

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Elevated pCO 2 alters marine heterotrophic bacterial community composition and metabolic potential in response to a pulse of phytoplankton organic matter von James, Anna K, Kelly, Linda W, Nelson, Craig E, Wilbanks, Elizabeth G, Carlson, Craig A

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Sequencing of seven haloarchaeal genomes reveals patterns of genomic flux von Lynch, Erin A, Langille, Morgan G I, Darling, Aaron, Wilbanks, Elizabeth G, Haltiner, Caitlin, Shao, Katie S Y, Starr, Michael O, Teiling, Clotilde, Harkins, Timothy T, Edwards, Robert A, Eisen, Jonathan A, Facciotti, Marc T

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Genome-Scale Mutational Analysis of Cathode-Oxidizing Thioclava electrotropha ElOx9T von Sackett, Joshua D., Kamble, Nitin, Leach, Edmund, Schuelke, Taruna, Wilbanks, Elizabeth, Rowe, Annette R.

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Giant kelp microbiome altered in the presence of epiphytes von James, Anna K., English, Chance J., Nidzieko, Nicholas J., Carlson, Craig A., Wilbanks, Elizabeth G.

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Elevated pCO2 alters marine heterotrophic bacterial community composition and metabolic potential in response to a pulse of phytoplankton organic matter von James, Anna K., Kelly, Linda W., Nelson, Craig E., Wilbanks, Elizabeth G., Carlson, Craig A.

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The Green Berry Consortia of the Sippewissett Salt Marsh: Millimeter-Sized Aggregates of Diazotrophic Unicellular Cyanobacteria von Wilbanks, Elizabeth G, Salman-Carvalho, Verena, Jaekel, Ulrike, Humphrey, Parris T, Eisen, Jonathan A, Buckley, Daniel H, Zinder, Stephen H

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Radiolysis via radioactivity is not responsible for rapid methane oxidation in subterranean air von Schimmelmann, Arndt, Fernandez-Cortes, Angel, Cuezva, Soledad, Streil, Thomas, Lennon, Jay T

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A workflow for genome-wide mapping of archaeal transcription factors with ChIP-seq von Wilbanks, Elizabeth G, Larsen, David J, Neches, Russell Y, Yao, Andrew I, Wu, Chia-Ying, Kjolby, Rachel A S, Facciotti, Marc T

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Physiologic, Genomic, and Electrochemical Characterization of Two Heterotrophic Marine Sediment Microbes from the Idiomarina Genus von Vinales, Jorge, Sackett, Joshua, Trutschel, Leah, Amir, Waleed, Norman, Casey, Leach, Edmund, Wilbanks, Elizabeth, Rowe, Annette

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