DNA methylation arrays as surrogate measures of cell mixture distribution von Houseman, Eugene Andres, Accomando, William P, Koestler, Devin C, Christensen, Brock C, Marsit, Carmen J, Nelson, Heather H, Wiencke, John K, Kelsey, Karl T

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An optimized library for reference-based deconvolution of whole-blood biospecimens assayed using the Illumina HumanMethylationEPIC BeadArray von Salas, Lucas A, Koestler, Devin C, Butler, Rondi A, Hansen, Helen M, Wiencke, John K, Kelsey, Karl T, Christensen, Brock C

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Enhanced cell deconvolution of peripheral blood using DNA methylation for high-resolution immune profiling von Salas, Lucas A., Zhang, Ze, Koestler, Devin C., Butler, Rondi A., Hansen, Helen M., Molinaro, Annette M., Wiencke, John K., Kelsey, Karl T., Christensen, Brock C.

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Survival and low-grade glioma: the emergence of genetic information von Claus, Elizabeth B, Walsh, Kyle M, Wiencke, John K, Molinaro, Annette M, Wiemels, Joseph L, Schildkraut, Joellen M, Bondy, Melissa L, Berger, Mitchel, Jenkins, Robert, Wrensch, Margaret

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The transcription factor GABP selectively binds and activates the mutant TERT promoter in cancer von Bell, Robert J. A., Rube, H. Tomas, Kreig, Alex, Mancini, Andrew, Fouse, Shaun D., Nagarajan, Raman P., Choi, Serah, Hong, Chibo, He, Daniel, Pekmezci, Melike, Wiencke, John K., Wrensch, Margaret R., Chang, Susan M., Walsh, Kyle M., Myong, Sua, Song, Jun S., Costello, Joseph F.

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Aging and environmental exposures alter tissue-specific DNA methylation dependent upon CpG island context von Christensen, Brock C, Houseman, E Andres, Marsit, Carmen J, Zheng, Shichun, Wrensch, Margaret R, Wiemels, Joseph L, Nelson, Heather H, Karagas, Margaret R, Padbury, James F, Bueno, Raphael, Sugarbaker, David J, Yeh, Ru-Fang, Wiencke, John K, Kelsey, Karl T

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HiTIMED: hierarchical tumor immune microenvironment epigenetic deconvolution for accurate cell type resolution in the tumor microenvironment using tumor-type-specific DNA methylati... von Zhang, Ze, Wiencke, John K, Kelsey, Karl T, Koestler, Devin C, Christensen, Brock C, Salas, Lucas A

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Systematic evaluation and validation of reference and library selection methods for deconvolution of cord blood DNA methylation data von Gervin, Kristina, Salas, Lucas A, Bakulski, Kelly M, van Zelm, Menno C, Koestler, Devin C, Wiencke, John K, Duijts, Liesbeth, Moll, Henriëtte A, Kelsey, Karl T, Kobor, Michael S, Lyle, Robert, Christensen, Brock C, Felix, Janine F, Jones, Meaghan J

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DNA Methylation, Isocitrate Dehydrogenase Mutation, and Survival in Glioma von CHRISTENSEN, Brock C, SMITH, Ashley A, KELSEY, Karl T, WIENCKE, John K, SHICHUN ZHENG, KOESTLER, Devin C, HOUSEMAN, E. Andres, MARSIT, Carmen J, WIEMELS, Joseph L, NELSON, Heather H, KARAGAS, Margaret R, WRENSCH, Margaret R

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Genetic and molecular epidemiology of adult diffuse glioma von Molinaro, Annette M., Taylor, Jennie W., Wiencke, John K., Wrensch, Margaret R.

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A global DNA methylation and gene expression analysis of early human B-cell development reveals a demethylation signature and transcription factor network von Lee, Seung-Tae, Xiao, Yuanyuan, Muench, Marcus O, Xiao, Jianqiao, Fomin, Marina E, Wiencke, John K, Zheng, Shichun, Dou, Xiaoqin, de Smith, Adam, Chokkalingam, Anand, Buffler, Patricia, Ma, Xiaomei, Wiemels, Joseph L

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The DNA methylation profile of activated human natural killer cells von Wiencke, John. K., Butler, Rondi, Hsuang, George, Eliot, Melissa, Kim, Stephanie, Sepulveda, Manuel A., Siegel, Derick, Houseman, E. Andres, Kelsey, Karl T.

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Breast cancer DNA methylation profiles are associated with tumor size and alcohol and folate intake von Christensen, Brock C, Kelsey, Karl T, Zheng, Shichun, Houseman, E Andres, Marsit, Carmen J, Wrensch, Margaret R, Wiemels, Joseph L, Nelson, Heather H, Karagas, Margaret R, Kushi, Lawrence H, Kwan, Marilyn L, Wiencke, John K

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Model-based clustering of DNA methylation array data: a recursive-partitioning algorithm for high-dimensional data arising as a mixture of beta distributions von Houseman, E Andres, Christensen, Brock C, Yeh, Ru-Fang, Marsit, Carmen J, Karagas, Margaret R, Wrensch, Margaret, Nelson, Heather H, Wiemels, Joseph, Zheng, Shichun, Wiencke, John K, Kelsey, Karl T

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Hierarchical deconvolution for extensive cell type resolution in the human brain using DNA methylation von Zhang, Ze, Wiencke, John K, Kelsey, Karl T, Koestler, Devin C, Molinaro, Annette M, Pike, Steven C, Karra, Prasoona, Christensen, Brock C, Salas, Lucas A

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Identification of a foetal epigenetic compartment in adult human kidney von Wiencke, John K., Zhang, Ze, Koestler, Devin C., Salas, Lucas A., Molinaro, Annette M., Christensen, Brock C., Kelsey, Karl T.

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Glioma immune microenvironment composition calculator (GIMiCC): a method of estimating the proportions of eighteen cell types from DNA methylation microarray data von Pike, Steven C, Wiencke, John K, Zhang, Ze, Molinaro, Annette M, Hansen, Helen M, Koestler, Devin C, Christensen, Brock C, Kelsey, Karl T, Salas, Lucas A

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Absence of an embryonic stem cell DNA methylation signature in human cancer von Zhang, Ze, Wiencke, John K, Koestler, Devin C, Salas, Lucas A, Christensen, Brock C, Kelsey, Karl T

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Identification of methylated genes associated with aggressive bladder cancer von Marsit, Carmen J, Houseman, E Andres, Christensen, Brock C, Gagne, Luc, Wrensch, Margaret R, Nelson, Heather H, Wiemels, Joseph, Zheng, Shichun, Wiencke, John K, Andrew, Angeline S, Schned, Alan R, Karagas, Margaret R, Kelsey, Karl T

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A Heritable Missense Polymorphism in CDKN2A Confers Strong Risk of Childhood Acute Lymphoblastic Leukemia and Is Preferentially Selected during Clonal Evolution von Walsh, Kyle M, de Smith, Adam J, Hansen, Helen M, Smirnov, Ivan V, Gonseth, Semira, Endicott, Alyson A, Xiao, Jianqiao, Rice, Terri, Fu, Cecilia H, McCoy, Lucie S, Lachance, Daniel H, Eckel-Passow, Jeanette E, Wiencke, John K, Jenkins, Robert B, Wrensch, Margaret R, Ma, Xiaomei, Metayer, Catherine, Wiemels, Joseph L

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