Nanopore-Based Measurements of Protein Size, Fluctuations, and Conformational Changes von Waduge, Pradeep, Hu, Rui, Bandarkar, Prasad, Yamazaki, Hirohito, Cressiot, Benjamin, Zhao, Qing, Whitford, Paul C, Wanunu, Meni

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SMOG 2: A Versatile Software Package for Generating Structure-Based Models von Noel, Jeffrey K, Levi, Mariana, Raghunathan, Mohit, Lammert, Heiko, Hayes, Ryan L, Onuchic, José N, Whitford, Paul C

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Steric interactions lead to collective tilting motion in the ribosome during mRNA–tRNA translocation von Nguyen, Kien, Whitford, Paul C.

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How EF-Tu can contribute to efficient proofreading of aa-tRNA by the ribosome von Noel, Jeffrey K., Whitford, Paul C.

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The Shadow Map: A General Contact Definition for Capturing the Dynamics of Biomolecular Folding and Function von Noel, Jeffrey K, Whitford, Paul C, Onuchic, José N

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Connecting the kinetics and energy landscape of tRNA translocation on the ribosome von Whitford, Paul C, Blanchard, Scott C, Cate, Jamie H D, Sanbonmatsu, Karissa Y

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A steric gate controls P/E hybrid-state formation of tRNA on the ribosome von Levi, Mariana, Walak, Kelsey, Wang, Ailun, Mohanty, Udayan, Whitford, Paul C.

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Mitoribosome structure with cofactors and modifications reveals mechanism of ligand binding and interactions with L1 stalk von Singh, Vivek, Itoh, Yuzuru, Del’Olio, Samuel, Hassan, Asem, Naschberger, Andreas, Flygaard, Rasmus Kock, Nobe, Yuko, Izumikawa, Keiichi, Aibara, Shintaro, Andréll, Juni, Whitford, Paul C., Barrientos, Antoni, Taoka, Masato, Amunts, Alexey

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Ratchet, swivel, tilt and roll: a complete description of subunit rotation in the ribosome von Hassan, Asem, Byju, Sandra, Freitas, Frederico Campos, Roc, Claude, Pender, Nisaa, Nguyen, Kien, Kimbrough, Evelyn M, Mattingly, Jacob M, Gonzalez, Jr, Ruben L, de Oliveira, Ronaldo Junio, Dunham, Christine M, Whitford, Paul C

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Conformational Transitions of Adenylate Kinase: Switching by Cracking von Whitford, Paul C., Miyashita, Osamu, Levy, Yaakov, Onuchic, José N.

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Diffusion of tRNA inside the ribosome is position-dependent von Yang, Huan, Bandarkar, Prasad, Horne, Ransom, Leite, Vitor B. P., Chahine, Jorge, Whitford, Paul C.

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Simulations of Phage T7 Capsid Expansion Reveal the Role of Molecular Sterics on Dynamics von Whitford, Paul C, Jiang, Wen, Serwer, Philip

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Distinguishing Biomolecular Pathways and Metastable States von Yang, Huan, Whitford, Paul C, Leite, Vitor B. P

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Head swivel on the ribosome facilitates translocation by means of intra-subunit tRNA hybrid sites von Ratje, Andreas H., Loerke, Justus, Mikolajka, Aleksandra, Brünner, Matthias, Hildebrand, Peter W., Starosta, Agata L., Dönhöfer, Alexandra, Connell, Sean R., Fucini, Paola, Mielke, Thorsten, Whitford, Paul C., Onuchic, José N., Yu, Yanan, Sanbonmatsu, Karissa Y., Hartmann, Roland K., Penczek, Pawel A., Wilson, Daniel N., Spahn, Christian M. T.

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Disorder guides protein function von Whitford, Paul C.

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Structural insights into mRNA reading frame regulation by tRNA modification and slippery codon-anticodon pairing von Hoffer, Eric D, Hong, Samuel, Sunita, S, Maehigashi, Tatsuya, Gonzalez, Jnr, Ruben L, Whitford, Paul C, Dunham, Christine M

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What protein folding teaches us about biological function and molecular machines von Whitford, Paul C, Onuchic, José N

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Order and disorder control the functional rearrangement of influenza hemagglutinin von Lin, Xingcheng, Eddy, Nathanial R., Noel, Jeffrey K., Whitford, Paul C., Wang, Qinghua, Ma, Jianpeng, Onuchic, José N.

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Probing remote residues important for catalysis in Escherichia coli ornithine transcarbamoylase von Ngu, Lisa, Winters, Jenifer N, Nguyen, Kien, Ramos, Kevin E, DeLateur, Nicholas A, Makowski, Lee, Whitford, Paul C, Ondrechen, Mary Jo, Beuning, Penny J

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The energy landscape of the ribosome von Byju, Sandra, Hassan, Asem, Whitford, Paul C.

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