Reducing echo state network size with controllability matrices von Whiteaker, Brian, Gerstoft, Peter

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PeTaL (Periodic Table of Life) and Physiomimetics von Shyam, Vikram, Friend, Lauren, Whiteaker, Brian, Bense, Nicholas, Dowdall, Jonathan, Boktor, Bishoy, Johny, Manju, Reyes, Isaias, Naser, Angeera, Sakhamuri, Nikhitha, Kravets, Victoria, Calvin, Alexandra, Gabus, Kaylee, Goodman, Delonte, Schilling, Herbert, Robinson, Calvin, Reid II, Robert Omar, Unsworth, Colleen

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Adaptive variational Hamiltonian Monte Carlo sampling with application to ocean acoustics von Whiteaker, Brian A., Jenkins, William F., Schmitt, Jeremy, Gerstoft, Peter

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AlphaZero Gomoku von Liang, Wen, Yu, Chao, Whiteaker, Brian, Huh, Inyoung, Shao, Hua, Liang, Youzhi

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Topic Modeling Tool for PeTaL (Periodic Table of Life) von Whiteaker, Brian A, Shyam, Vikram

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A Machine Learning Approach to Jet-Surface Interaction Noise Modeling von Brown, Cliff, Dowdall, Johnny, Whiteaker, Brian, Mcintyre, Lauren, Miller, Chris

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AlphaZero Gomoku von Liang, Wen, Yu, Chao, Whiteaker, Brian, Huh, Inyoung, Shao, Hua, Liang, Youzhi

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Proteogenomic Characterization Reveals Therapeutic Vulnerabilities in Lung Adenocarcinoma von Satpathy, Shankha, Cao, Song, Dhanasekaran, Saravana M., Vasaikar, Suhas V., Petralia, Francesca, Liang, Wen-Wei, Krek, Azra, Hong, Runyu, Blumenberg, Lili, Wendl, Michael C., Wen, Bo, Tang, Lauren C., MacMullan, Melanie A., Kane, M. Harry, Newton, Chelsea J., Cornwell, MacIntosh, Yoo, Seungyeul, Mannan, Rahul, Vats, Pankaj, Kumar-Sinha, Chandan, Colaprico, Antonio, Geffen, Yifat, Wiznerowicz, Maciej, Gümüş, Zeynep H., Veluswamy, Rajwanth R., Hostetter, Galen, Mesri, Mehdi, Boja, Emily S., Omenn, Gilbert S., Thiagarajan, Mathangi, Getz, Gad, Cieslik, Marcin P., Govindan, Ramaswamy, Wang, Pei, Nesvizhskii, Alexey I., Ding, Li, Mani, D.R., Francis, Alicia, Charamut, Alyssa, Paulovich, Amanda G., Karnuta, Andrii, Hindenach, Barbara, Druker, Brian J., Birger, Chet, Jones, Corbin D., Rohrer, Daniel C., Zhou, Daniel Cui, Chan, Daniel W., Chesla, David, Clark, David J., Tan, Donghui, Duffy, Elizabeth, Bergstrom, Erik J., Wilson, George D., Chen, Hai-Quan, Sun, Hua, Whiteaker, Jeffrey R., Rodland, Karin D., Hoadley, Katherine A., Elburn, Kim, Hannick, Linda, Qi, Liqun, Sokoll, Lori J., Wojtyś, Małgorzata, Domagalski, Marcin J., Beasley, Mary B., Monroe, Matthew E., Ellis, Matthew J., Dyer, Maureen, Burke, Meghan C., Borucki, Melissa, Schnaubelt, Michael, Chaikin, Michelle, Selvan, Myvizhi Esai, McGarvey, Peter B., Thangudu, Ratna R., Smith, Richard D., Welsh, Robert J., Zelt, Robert, Mehra, Rohit, Matteotti, Ronald, Mareedu, Sailaja, Payne, Samuel H., Cottingham, Sandra, Chugh, Seema, Smith, Shaleigh, Tsang, Shirley, Cai, Shuang, Boca, Simina M., Stein, Stephen E., Krubit, Tanya, Skelly, Tara, Bauer, Thomas, Velvulou, Uma, Petyuk, Vladislav A., Bocik, William E., Maggio, William W., Chen, Xi, Wu, Yige, Shi, Zhiao

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Integrated Proteogenomic Characterization of Clear Cell Renal Cell Carcinoma von Pan, Jianbo, Hu, Yingwei, Krek, Azra, Li, Yize, Chen, Lin S., Vasaikar, Suhas, Wu, Yige, Chowdhury, Shrabanti, Wyczalkowski, Matthew A., Kong, Andy, Sethuraman, Sunantha, Avtonomov, Dmitry M., Colaprico, Antonio, Cao, Song, Cho, Kyung-Cho, Kalayci, Selim, Ma, Shiyong, Ruggles, Kelly, Kawaler, Emily, Wen, Bo, Chen, Feng, Edwards, Nathan, Pierorazio, Phillip M., Pavlovich, Christian P., Brominski, Gabriel, Hsieh, James J., Lubinski, Jan, Wiznerowicz, Maciej, Kinsinger, Christopher R., Thiagarajan, Mathangi, Mesri, Mehdi, Hiltke, Tara, Ding, Li, Zhang, Zhen, Omenn, Gilbert S., Cieslik, Marcin, Nesvizhskii, Alexey I., Zhang, Hui, Hashimi, Abdul Samad, Charamut, Alyssa, Druker, Brian J., Tognon, Cristina, Mani, D.R., Rohrer, Daniel C., Tansil, Darlene, Chesla, David, Heiman, David, Wheeler, David, Chan, Doug, Demir, Emek, Wilson, George D., Liu, Hongwei, Zhou, Hua, Day, Jacob, Suh, James, Whiteaker, Jeffrey R., Eschbacher, Jennifer, Chen, Jin, Ketchum, Karen A., Rodland, Karin D., Krug, Karsten, Holloway, Kimberly, Sokoll, Lori J., Cornwell, MacIntosh, Loriaux, Marc, Anderson, Matthew, Ellis, Matthew J., Dyer, Maureen, Burke, Meghan C., Borucki, Melissa, Gillette, Michael A., Birrer, Michael J., Smith, Michael, Khan, Munziba, Roche, Nancy, Edwards, Nathan J., Vatanian, Negin, Tignor, Nicole, Piehowski, Paul, McGarvey, Peter B., Hariharan, Pushpa, Gao, Qingsong, Thangudu, Ratna R., Montgomery, Rebecca, Bremner, Ross, Liu, Ruiyang, Hong, Runyu, Payne, Samuel H., Patel, Shalin, Satpathy, Shankha, Davies, Sherri R., Patil, Snehal, Carter, Sonya, Gabriel, Stacey, Thomas, Stefani N., Carr, Steven A., Skelly, Tara, Borate, Uma, Maruvka, Yosef, Li, Zhi

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Antibody-based enrichment of peptides on magnetic beads for mass-spectrometry-based quantification of serum biomarkers von Whiteaker, Jeffrey R., Zhao, Lei, Zhang, Heidi Y., Feng, Li-Chia, Piening, Brian D., Anderson, Leigh, Paulovich, Amanda G.

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Integrated Pipeline for Mass Spectrometry-Based Discovery and Confirmation of Biomarkers Demonstrated in a Mouse Model of Breast Cancer von Whiteaker, Jeffrey R, Zhang, Heidi, Zhao, Lei, Wang, Pei, Kelly-Spratt, Karen S, Ivey, Richard G, Piening, Brian D, Feng, Li-Chia, Kasarda, Erik, Gurley, Kay E, Eng, Jimmy K, Chodosh, Lewis A, Kemp, Christopher J, McIntosh, Martin W, Paulovich, Amanda G

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Integrated Proteogenomic Characterization of Clear Cell Renal Cell Carcinoma von Clark, David J., Petralia, Francesca, Pan, Jianbo, Hu, Yingwei, Lih, Tung-Shing M., Chang, Hui-Yin, Ma, Weiping, Krek, Azra, Li, Yize, Ozbek, Umut, Wu, Yige, Chowdhury, Shrabanti, Wyczalkowski, Matthew A., Schnaubelt, Michael, Avtonomov, Dmitry M., Kalayci, Selim, Ma, Shiyong, Ruggles, Kelly, Gümüş, Zeynep H., Kawaler, Emily, Edwards, Nathan, Chen, Xi Steven, Antczak, Andrzej, Omelchenko, Tatiana, Kinsinger, Christopher R., Thiagarajan, Mathangi, Mesri, Mehdi, Robles, Ana I., Qian, Jiang, Fenyö, David, Zhang, Bing, Zhang, Zhen, Cieslik, Marcin, Chan, Daniel W., Nesvizhskii, Alexey I., Hashimi, Abdul Samad, Charamut, Alyssa, Druker, Brian J., Tognon, Cristina, Mani, D.R., Rohrer, Daniel C., Tansil, Darlene, Chesla, David, Heiman, David, Wheeler, David, Chan, Doug, Demir, Emek, Modugno, Francesmary, Getz, Gaddy, Wilson, George D., Liu, Hongwei, Zhou, Hua, Day, Jacob, Suh, James, Whiteaker, Jeffrey R., Eschbacher, Jennifer, Chen, Jin, Ketchum, Karen A., Rodland, Karin D., Krug, Karsten, Holloway, Kimberly, Sokoll, Lori J., Cornwell, MacIntosh, Loriaux, Marc, Anderson, Matthew, Ellis, Matthew J., Dyer, Maureen, Burke, Meghan C., Borucki, Melissa, Gillette, Michael A., Birrer, Michael J., Smith, Michael, Khan, Munziba, Roche, Nancy, Edwards, Nathan J., Vatanian, Negin, Tignor, Nicole, Grady, Pamela, Piehowski, Paul, McGarvey, Peter B., Hariharan, Pushpa, Gao, Qingsong, Thangudu, Ratna R., Montgomery, Rebecca, Bremner, Ross, Liu, Ruiyang, Hong, Runyu, Payne, Samuel H., Patel, Shalin, Satpathy, Shankha, Davies, Sherri R., Patil, Snehal, Carter, Sonya, Gabriel, Stacey, Thomas, Stefani N., Carr, Steven A., Skelly, Tara, Borate, Uma, Maruvka, Yosef, Li, Zhi

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Head-to-Head Comparison of Serum Fractionation Techniques von Whiteaker, Jeffrey R, Zhang, Heidi, Eng, Jimmy K, Fang, Ruihua, Piening, Brian D, Feng, Li-Chia, Lorentzen, Travis D, Schoenherr, Regine M, Keane, John F, Holzman, Ted, Fitzgibbon, Matthew, Lin, Zhang, Hui, Cooke, Kelly, Liu, Tao, Camp, David G, Anderson, Leigh, Watts, Julian, Smith, Richard D, McIntosh, Martin W, Paulovich, Amanda G

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Phasing the Webb Telescope von Acton, D. Scott, Knight, Scott, Carrasquilla, Maria, Weiser, Nick, Masciarelli, Michaela, Jurczyk, Sarah, Rapp, Greg, Mueckay, Julio, Wolf, Erin, Murphy, Jess, Carey, Larkin, Coppock, Eric, Walker, Chanda, Runnels, Joel, West, Garrett, Wirth, Greg, Hicks, Brian, Melbourne, Katie, Gordon, Michael, Brown, Bob, Grimaldi, Stefano, Sabatke, Derek, Wright, Ray, Coyle, Laura, Chonis, Taylor, Whiteaker, Kevin, Perrin, Marshall, Comeau, Tom, Lajoie, Charles-Philippe, Hartig, George, Beck, Tracy, Lallo, Matt, Regan, Mike, Telfer, Randal, Meléndez, Marcio, Brady, Greg, Pueyo, Laurent, Flagey, Nicolas, Kulp, Bernard, Nelan, Ed, Zielinski, Tom, Jurling, Alden, Bergkoetter, Matt, Bowers, Chuck, Dean, Bruce, Feinberg, Lee, Keski-Kuha, Ritva, Kirk, Jeff, McElwain, Michael W., Howard, Joe

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TBIO-19. INTEGRATED GENOMIC, PROTEOMIC AND PHOSPHOPROTEOMIC ANALYSIS OF SEVEN TYPES OF PEDIATRIC BRAIN CANCER von Petralia, Francesca, Tignor, Nicole, Rykunov, Dmitri, Revas, Boris, Chowdhury, Shrabanti, Krek, Azra, Raman, Pichae, Ji, Jiayi, Zhu, Yuankun, Ma, Weiping, Song, Xiaoyu, Fenyo, David, Gygi, Steven, Ivey, Richard, Iavarone, Antonio, Whiteaker, Jeffrey, Colaprico, Antonio, Nesvizhskii, Alexey, Rodriguez, Henry, Paulovich, Amanda, Hiltke, Tara, Resnick, Adam, Wang, Pei, Rood, Brian

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Abstract 445: Integrated proteogenomic characterization across seven histological types of pediatric brain tumors von Petralia, Francesca, Tignor, Nicole, Reva, Boris, Raman, Pichai, Chowdhury, Shrabanti, Rykunov, Dmitry, Krek, Azra, Ma, Weiping, Ji, Jiayi, Song, Xiaoyu, Zhu, Yuankun, Rokita, Jo Lynne, Colaprico, Antonio, Calinawan, Anna, Whiteaker, Jeffrey R., Ivey, Richard G., Gumus, Zeynep, Kalayci, Selim, Garcia, Gonzalo L., Yoo, Seungyeul, Katsnelson, Lizabeth, Wang, Ying, Kennedy, Jacob J., Voytovich, Uliana J., Zhao, Lei, Leprevost, Felipe, Chang, Hui-Yin, Gaonkar, Krutika S., Appert, Elizabeth M., Cuellar, Ximena, Lilly, Jena, Zhu, Jun, Schadt, Eric E., Mesri, Medhi, Boja, Emily, Hiltka, Tara, Rodriguez, Henry, Ding, Li, Iavarone, Antonio, Wiznerowicz, Maciej, Nesvizhskii, Alexey I., Fenyo, David, Gygi, Steven, Paulovich, Amanda, Resnick, Adam C., Storm, Phillip B., Rood, Brian, Wang, Pei

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GENE-19. DEEP PROTEOMIC SURVEY ACROSS SEVEN CHILDHOOD BRAIN TUMORS von Wang, Pei, Tignor, Nicole, Gygi, Steven, Ivey, Richard, Paulovich, Amanda, Nescizhskii, Alexey, Thakurta, Sanjukta Guha, Whiteaker, Jeffery, Kennedy, Jacob, Voytovich, Uliana, Ding, Li, Wang, Liang Bo, Raman, Pichai, Zhu, Yuankun, Hiltke, Tara, Resnick, Adam, Rood, Brian

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Assessing Bias in Experiment Design for Large Scale Mass Spectrometry-based Quantitative Proteomics von Prakash, Amol, Piening, Brian, Whiteaker, Jeff, Zhang, Heidi, Shaffer, Scott A., Martin, Daniel, Hohmann, Laura, Cooke, Kelly, Olson, James M., Hansen, Stacey, Flory, Mark R., Lee, Hookeun, Watts, Julian, Goodlett, David R., Aebersold, Ruedi, Paulovich, Amanda, Schwikowski, Benno

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Quality control metrics for LC-MS feature detection tools demonstrated on Saccharomyces cerevisiae proteomic profiles von Piening, Brian D, Wang, Pei, Bangur, Chaitanya S, Whiteaker, Jeffrey, Zhang, Heidi, Feng, Li-Chia, Keane, John F, Eng, Jimmy K, Tang, Hua, Prakash, Amol, McIntosh, Martin W, Paulovich, Amanda

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Quality Control Metrics for LC−MS Feature Detection Tools Demonstrated on Saccharomyces c erevisiae Proteomic Profiles von Piening, Brian D, Wang, Pei, Bangur, Chaitanya S, Whiteaker, Jeffrey, Zhang, Heidi, Feng, Li-Chia, Keane, John F, Eng, Jimmy K, Tang, Hua, Prakash, Amol, McIntosh, Martin W, Paulovich, Amanda

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