Stool Microbiome and Metabolome Differences between Colorectal Cancer Patients and Healthy Adults von Weir, Tiffany L, Manter, Daniel K, Sheflin, Amy M, Barnett, Brittany A, Heuberger, Adam L, Ryan, Elizabeth P, White, Bryan A

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Comparing Apples and Oranges?: Next Generation Sequencing and Its Impact on Microbiome Analysis von Clooney, Adam G, Fouhy, Fiona, Sleator, Roy D, O' Driscoll, Aisling, Stanton, Catherine, Cotter, Paul D, Claesson, Marcus J

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Genome-Wide Association Studies of the Human Gut Microbiota von Davenport, Emily R, Cusanovich, Darren A, Michelini, Katelyn, Barreiro, Luis B, Ober, Carole, Gilad, Yoav

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Identifying keystone species in the human gut microbiome from metagenomic timeseries using sparse linear regression von Fisher, Charles K, Mehta, Pankaj

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Integrated metagenomics/metaproteomics reveals human host-microbiota signatures of Crohn's disease von Erickson, Alison R, Cantarel, Brandi L, Lamendella, Regina, Darzi, Youssef, Mongodin, Emmanuel F, Pan, Chongle, Shah, Manesh, Halfvarson, Jonas, Tysk, Curt, Henrissat, Bernard, Raes, Jeroen, Verberkmoes, Nathan C, Fraser, Claire M, Hettich, Robert L, Jansson, Janet K

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Simultaneous amplicon sequencing to explore co-occurrence patterns of bacterial, archaeal and eukaryotic microorganisms in rumen microbial communities von Kittelmann, Sandra, Seedorf, Henning, Walters, William A, Clemente, Jose C, Knight, Rob, Gordon, Jeffrey I, Janssen, Peter H

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Taxonomic classification of bacterial 16S rRNA genes using short sequencing reads: evaluation of effective study designs von Mizrahi-Man, Orna, Davenport, Emily R, Gilad, Yoav

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Architectural design drives the biogeography of indoor bacterial communities von Kembel, Steven W, Meadow, James F, O'Connor, Timothy K, Mhuireach, Gwynne, Northcutt, Dale, Kline, Jeff, Moriyama, Maxwell, Brown, G Z, Bohannan, Brendan J M, Green, Jessica L

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Analyses of the stability and core taxonomic memberships of the human microbiome von Li, Kelvin, Bihan, Monika, Methé, Barbara A

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The effects of a probiotic yeast on the bacterial diversity and population structure in the rumen of cattle von Pinloche, Eric, McEwan, Neil, Marden, Jean-Philippe, Bayourthe, Corinne, Auclair, Eric, Newbold, C Jamie

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Murine gut microbiota is defined by host genetics and modulates variation of metabolic traits von McKnite, Autumn M, Perez-Munoz, Maria Elisa, Lu, Lu, Williams, Evan G, Brewer, Simon, Andreux, Pénélope A, Bastiaansen, John W M, Wang, Xusheng, Kachman, Stephen D, Auwerx, Johan, Williams, Robert W, Benson, Andrew K, Peterson, Daniel A, Ciobanu, Daniel C

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Illumina MiSeq Phylogenetic Amplicon Sequencing Shows a Large Reduction of an Uncharacterised Succinivibrionaceae and an Increase of the Methanobrevibacter gottschalkii Clade in Fe... von McCabe, Matthew Sean, Cormican, Paul, Keogh, Kate, O'Connor, Aaron, O'Hara, Eoin, Palladino, Rafael Alejandro, Kenny, David Anthony, Waters, Sinéad Mary

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Effect of oral administration of metronidazole or prednisolone on fecal microbiota in dogs von Igarashi, Hirotaka, Maeda, Shingo, Ohno, Koichi, Horigome, Ayako, Odamaki, Toshitaka, Tsujimoto, Hajime

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Genome-wide association study identifies Loci and candidate genes for body composition and meat quality traits in Beijing-You chickens von Liu, Ranran, Sun, Yanfa, Zhao, Guiping, Wang, Fangjie, Wu, Dan, Zheng, Maiqing, Chen, Jilan, Zhang, Lei, Hu, Yaodong, Wen, Jie

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Faecal Metaproteomic Analysis Reveals a Personalized and Stable Functional Microbiome and Limited Effects of a Probiotic Intervention in Adults von Kolmeder, Carolin A, Salojärvi, Jarkko, Ritari, Jarmo, de Been, Mark, Raes, Jeroen, Falony, Gwen, Vieira-Silva, Sara, Kekkonen, Riina A, Corthals, Garry L, Palva, Airi, Salonen, Anne, de Vos, Willem M

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Comparison of the Oral Microbiomes of Canines and Their Owners Using Next-Generation Sequencing von Oh, Changin, Lee, Kunkyu, Cheong, Yeotaek, Lee, Sang-Won, Park, Seung-Yong, Song, Chang-Seon, Choi, In-Soo, Lee, Joong-Bok

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Metagenomic predictions: from microbiome to complex health and environmental phenotypes in humans and cattle von Ross, Elizabeth M, Moate, Peter J, Marett, Leah C, Cocks, Ben G, Hayes, Ben J

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Hundreds of circular novel plasmids and DNA elements identified in a rat cecum metamobilome von Jørgensen, Tue Sparholt, Xu, Zhuofei, Hansen, Martin Asser, Sørensen, Søren Johannes, Hansen, Lars Hestbjerg

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Lambs fed fresh winter forage rape (Brassica napus L.) emit less methane than those fed perennial ryegrass (Lolium perenne L.), and possible mechanisms behind the difference von Sun, Xuezhao, Henderson, Gemma, Cox, Faith, Molano, German, Harrison, Scott J, Luo, Dongwen, Janssen, Peter H, Pacheco, David

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Long-term effects of subacute ruminal acidosis (SARA) on milk quality and hepatic gene expression in lactating goats fed a high-concentrate diet von Dong, Haibo, Wang, Shaoqing, Jia, Yuanyuan, Ni, Yingdong, Zhang, Yuanshu, Zhuang, Su, Shen, Xiangzhen, Zhao, Ruqian

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