Genome-wide analysis of drosophila circular RNAs reveals their structural and sequence properties and age-dependent neural accumulation von Westholm, Jakub O, Miura, Pedro, Olson, Sara, Shenker, Sol, Joseph, Brian, Sanfilippo, Piero, Celniker, Susan E, Graveley, Brenton R, Lai, Eric C

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Widespread and extensive lengthening of 3' UTRs in the mammalian brain von Miura, Pedro, Shenker, Sol, Andreu-Agullo, Celia, Westholm, Jakub O, Lai, Eric C

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Loss of Lamin A leads to the nuclear translocation of AGO2 and compromised RNA interference von Lobo, Vivian, Nowak, Iwona, Fernandez, Carola, Correa Muler, Ana Iris, Westholm, Jakub O, Huang, Hsiang-Chi, Fabrik, Ivo, Huynh, Hang T, Shcherbinina, Evgeniia, Poyraz, Melis, Härtlova, Anetta, Benhalevy, Daniel, Angeletti, Davide, Sarshad, Aishe A

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Global Patterns of Tissue-Specific Alternative Polyadenylation in Drosophila von Smibert, Peter, Miura, Pedro, Westholm, Jakub O., Shenker, Sol, May, Gemma, Duff, Michael O., Zhang, Dayu, Eads, Brian D., Carlson, Joe, Brown, James B., Eisman, Robert C., Andrews, Justen, Kaufman, Thomas, Cherbas, Peter, Celniker, Susan E., Graveley, Brenton R., Lai, Eric C.

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The BEN domain is a novel sequence-specific DNA-binding domain conserved in neural transcriptional repressors von Dai, Qi, Ren, Aiming, Westholm, Jakub O, Serganov, Artem A, Patel, Dinshaw J, Lai, Eric C

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Common and distinct DNA-binding and regulatory activities of the BEN-solo transcription factor family von Dai, Qi, Ren, Aiming, Westholm, Jakub O, Duan, Hong, Patel, Dinshaw J, Lai, Eric C

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Integrative transcriptomic and proteomic profiling of the effects of cell confluency on gene expression von Lobo, Vivian, Shcherbinina, Evgeniia, Westholm, Jakub O., Nowak, Iwona, Huang, Hsiang-Chi, Angeletti, Davide, Anastasakis, Dimitrios G., Sarshad, Aishe A.

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Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines von Wen, Jiayu, Mohammed, Jaaved, Bortolamiol-Becet, Diane, Tsai, Harrison, Robine, Nicolas, Westholm, Jakub O, Ladewig, Erik, Dai, Qi, Okamura, Katsutomo, Flynt, Alex S, Zhang, Dayu, Andrews, Justen, Cherbas, Lucy, Kaufman, Thomas C, Cherbas, Peter, Siepel, Adam, Lai, Eric C

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Comprehensive RNA-Sequencing Analysis in Serum and Muscle Reveals Novel Small RNA Signatures with Biomarker Potential for DMD von Coenen-Stass, Anna M.L., Sork, Helena, Gatto, Sole, Godfrey, Caroline, Bhomra, Amarjit, Krjutškov, Kaarel, Hart, Jonathan R., Westholm, Jakub O., O’Donovan, Liz, Roos, Andreas, Lochmüller, Hanns, Puri, Pier Lorenzo, EL Andaloussi, Samir, Wood, Matthew J.A., Roberts, Thomas C.

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Intertwined pathways for Argonaute-mediated microRNA biogenesis in Drosophila von Yang, Jr-Shiuan, Smibert, Peter, Westholm, Jakub O, Jee, David, Maurin, Thomas, Lai, Eric C

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Vive la différence: biogenesis and evolution of microRNAs in plants and animals von Axtell, Michael J, Westholm, Jakub O, Lai, Eric C

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Mirtrons: microRNA biogenesis via splicing von Westholm, Jakub O., Lai, Eric C.

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Discovery of hundreds of mirtrons in mouse and human small RNA data von Ladewig, Erik, Okamura, Katsutomo, Flynt, Alex S, Westholm, Jakub O, Lai, Eric C

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Deep annotation of Drosophila melanogaster microRNAs yields insights into their processing, modification, and emergence von Berezikov, Eugene, Robine, Nicolas, Samsonova, Anastasia, Westholm, Jakub O, Naqvi, Ammar, Hung, Jui-Hung, Okamura, Katsutomo, Dai, Qi, Bortolamiol-Becet, Diane, Martin, Raquel, Zhao, Yongjun, Zamore, Phillip D, Hannon, Gregory J, Marra, Marco A, Weng, Zhiping, Perrimon, Norbert, Lai, Eric C

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Genome-wide identification of Grainy head targets in Drosophila reveals regulatory interactions with the POU domain transcription factor Vvl von Yao, Liqun, Wang, Shenqiu, Westholm, Jakub O, Dai, Qi, Matsuda, Ryo, Hosono, Chie, Bray, Sarah, Lai, Eric C, Samakovlis, Christos

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Common and distinct patterns of terminal modifications to mirtrons and canonical microRNAs von Westholm, Jakub O, Ladewig, Erik, Okamura, Katsutomo, Robine, Nicolas, Lai, Eric C

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Computational and experimental identification of mirtrons in Drosophila melanogaster and Caenorhabditis elegans von Chung, Wei-Jen, Agius, Phaedra, Westholm, Jakub O, Chen, Michael, Okamura, Katsutomo, Robine, Nicolas, Leslie, Christina S, Lai, Eric C

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Global Patterns of Tissue-Specific Alternative Polyadenylation in Drosophila von Smibert, Peter, Miura, Pedro, Westholm, Jakub O., Shenker, Sol, May, Gemma, Duff, Michael O., Zhang, Dayu, Eads, Brian D., Carlson, Joe, Brown, James B., Eisman, Robert C., Andrews, Justen, Kaufman, Thomas, Cherbas, Peter, Celniker, Susan E., Graveley, Brenton R., Lai, Eric C.

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Visualization and analysis of gene expression in tissue sections by spatial transcriptomics von Ståhl, Patrik L., Salmén, Fredrik, Vickovic, Sanja, Lundmark, Anna, Navarro, José Fernández, Magnusson, Jens, Giacomello, Stefania, Asp, Michaela, Westholm, Jakub O., Huss, Mikael, Mollbrink, Annelie, Linnarsson, Sten, Codeluppi, Simone, Borg, Åke, Pontén, Fredrik, Costea, Paul Igor, Sahlén, Pelin, Mulder, Jan, Bergmann, Olaf, Lundeberg, Joakim, Frisén, Jonas

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Spatially resolved multiomics on the neuronal effects induced by spaceflight in mice von Masarapu, Yuvarani, Cekanaviciute, Egle, Andrusivova, Zaneta, Westholm, Jakub O., Björklund, Åsa, Fallegger, Robin, Badia-i-Mompel, Pau, Boyko, Valery, Vasisht, Shubha, Saravia-Butler, Amanda, Gebre, Samrawit, Lázár, Enikő, Graziano, Marta, Frapard, Solène, Hinshaw, Robert G., Bergmann, Olaf, Taylor, Deanne M., Wallace, Douglas C., Sylvén, Christer, Meletis, Konstantinos, Saez-Rodriguez, Julio, Galazka, Jonathan M., Costes, Sylvain V., Giacomello, Stefania

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