Caspase 3/GSDME-dependent pyroptosis contributes to chemotherapy drug-induced nephrotoxicity von Shen, Xiujin, Wang, Haibing, Weng, Chunhua, Jiang, Hong, Chen, Jianghua

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Translating evidence into practice: eligibility criteria fail to eliminate clinically significant differences between real-world and study populations von Averitt, Amelia J., Weng, Chunhua, Ryan, Patrick, Perotte, Adler

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Defining and measuring completeness of electronic health records for secondary use von Weiskopf, Nicole G., Hripcsak, George, Swaminathan, Sushmita, Weng, Chunhua

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Evaluating large language models on medical evidence summarization von Tang, Liyan, Sun, Zhaoyi, Idnay, Betina, Nestor, Jordan G., Soroush, Ali, Elias, Pierre A., Xu, Ziyang, Ding, Ying, Durrett, Greg, Rousseau, Justin F., Weng, Chunhua, Peng, Yifan

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Doc2Hpo: a web application for efficient and accurate HPO concept curation von Liu, Cong, Peres Kury, Fabricio Sampaio, Li, Ziran, Ta, Casey, Wang, Kai, Weng, Chunhua

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Deep Phenotyping on Electronic Health Records Facilitates Genetic Diagnosis by Clinical Exomes von Son, Jung Hoon, Xie, Gangcai, Yuan, Chi, Ena, Lyudmila, Li, Ziran, Goldstein, Andrew, Huang, Lulin, Wang, Liwei, Shen, Feichen, Liu, Hongfang, Mehl, Karla, Groopman, Emily E., Marasa, Maddalena, Kiryluk, Krzysztof, Gharavi, Ali G., Chung, Wendy K., Hripcsak, George, Friedman, Carol, Weng, Chunhua, Wang, Kai

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A comparative study of pre-trained language models for named entity recognition in clinical trial eligibility criteria from multiple corpora von Li, Jianfu, Wei, Qiang, Ghiasvand, Omid, Chen, Miao, Lobanov, Victor, Weng, Chunhua, Xu, Hua

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Guideline concordant care for prevention of acute chemotherapy-induced nausea and vomiting in children, adolescents, and young adults von Beauchemin, Melissa, Sung, Lillian, Hershman, Dawn L., Weng, Chunhua, Dupuis, L. Lee, Schnall, Rebecca

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Polygenic risk alters the penetrance of monogenic kidney disease von Khan, Atlas, Shang, Ning, Nestor, Jordan G., Weng, Chunhua, Hripcsak, George, Harris, Peter C., Gharavi, Ali G., Kiryluk, Krzysztof

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Genome-wide polygenic score to predict chronic kidney disease across ancestries von Khan, Atlas, Turchin, Michael C., Patki, Amit, Srinivasasainagendra, Vinodh, Shang, Ning, Nadukuru, Rajiv, Jones, Alana C., Malolepsza, Edyta, Dikilitas, Ozan, Kullo, Iftikhar J., Schaid, Daniel J., Karlson, Elizabeth, Ge, Tian, Meigs, James B., Smoller, Jordan W., Lange, Christoph, Crosslin, David R., Jarvik, Gail P., Bhatraju, Pavan K., Hellwege, Jacklyn N., Chandler, Paulette, Torvik, Laura Rasmussen, Fedotov, Alex, Liu, Cong, Kachulis, Christopher, Lennon, Niall, Abul-Husn, Noura S., Cho, Judy H., Ionita-Laza, Iuliana, Gharavi, Ali G., Chung, Wendy K., Hripcsak, George, Weng, Chunhua, Nadkarni, Girish, Irvin, Marguerite R., Tiwari, Hemant K., Kenny, Eimear E., Limdi, Nita A., Kiryluk, Krzysztof

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Impaired Amino Acid Metabolism and Its Correlation with Diabetic Kidney Disease Progression in Type 2 Diabetes Mellitus von Zhu, Huanhuan, Bai, Mengqiu, Xie, Xishao, Wang, Junni, Weng, Chunhua, Dai, Huifen, Chen, Jianghua, Han, Fei, Lin, Weiqiang

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Rapid exome sequencing in PICU patients with new-onset metabolic or neurological disorders von Carey, Abigail S., Schacht, John P., Umandap, Christine, Fasel, David, Weng, Chunhua, Cappell, Joshua, Chung, Wendy K., Kernie, Steven G.

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A deep database of medical abbreviations and acronyms for natural language processing von Grossman Liu, Lisa, Grossman, Raymond H., Mitchell, Elliot G., Weng, Chunhua, Natarajan, Karthik, Hripcsak, George, Vawdrey, David K.

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Valx: A System for Extracting and Structuring Numeric Lab Test Comparison Statements from Text von Hao, Tianyong, Liu, Hongfang, Weng, Chunhua

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The Mitochondria-Targeted Metabolic Tubular Injury in Diabetic Kidney Disease von Jiang, Hong, Shao, Xue, Jia, Sha, Qu, Lihui, Weng, Chunhua, Shen, Xiujin, Wang, Yucheng, Huang, Hongfeng, Wang, Yingying, Wang, Cuili, Feng, Shi, Wang, Meizhen, Feng, Huajun, Geekiyanage, Sudarshanee, Davidson, Alan James, Chen, Jianghua

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Performance of Retrieval-Augmented Large Language Models to Recommend Head and Neck Cancer Clinical Trials von Hung, Tony K W, Kuperman, Gilad J, Sherman, Eric J, Ho, Alan L, Weng, Chunhua, Pfister, David G, Mao, Jun J

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Towards clinical data-driven eligibility criteria optimization for interventional COVID-19 clinical trials von Kim, Jae Hyun, Ta, Casey N., Liu, Cong, Sung, Cynthia, Butler, Alex M., Stewart, Latoya A., Ena, Lyudmila, Rogers, James R., Lee, Junghwan, Ostropolets, Anna, Ryan, Patrick B., Liu, Hao, Lee, Shing M., Elkind, Mitchell S., Weng, Chunhua

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Formal representation of eligibility criteria: A literature review von Weng, Chunhua, Tu, Samson W., Sim, Ida, Richesson, Rachel

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Natural language processing (NLP) tools in extracting biomedical concepts from research articles: a case study on autism spectrum disorder von Peng, Jacqueline, Zhao, Mengge, Havrilla, James, Liu, Cong, Weng, Chunhua, Guthrie, Whitney, Schultz, Robert, Wang, Kai, Zhou, Yunyun

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Modelling kidney disease using ontology: insights from the Kidney Precision Medicine Project von Ong, Edison, Wang, Lucy L., Schaub, Jennifer, O’Toole, John F., Steck, Becky, Rosenberg, Avi Z., Dowd, Frederick, Hansen, Jens, Barisoni, Laura, Jain, Sanjay, de Boer, Ian H., Valerius, M. Todd, Waikar, Sushrut S., Park, Christopher, Crawford, Dana C., Alexandrov, Theodore, Anderton, Christopher R., Stoeckert, Christian, Weng, Chunhua, Diehl, Alexander D., Mungall, Christopher J., Haendel, Melissa, Robinson, Peter N., Himmelfarb, Jonathan, Iyengar, Ravi, Kretzler, Matthias, Mooney, Sean, He, Yongqun

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