Convergence of Developmental and Oncogenic Signaling Pathways at Transcriptional Super-Enhancers von Hnisz, Denes, Schuijers, Jurian, Lin, Charles Y., Weintraub, Abraham S., Abraham, Brian J., Lee, Tong Ihn, Bradner, James E., Young, Richard A.

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Control of Cell Identity Genes Occurs in Insulated Neighborhoods in Mammalian Chromosomes von Dowen, Jill M., Fan, Zi Peng, Hnisz, Denes, Ren, Gang, Abraham, Brian J., Zhang, Lyndon N., Weintraub, Abraham S., Schuijers, Jurian, Lee, Tong Ihn, Zhao, Keji, Young, Richard A.

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3D Chromosome Regulatory Landscape of Human Pluripotent Cells von Ji, Xiong, Dadon, Daniel B., Powell, Benjamin E., Fan, Zi Peng, Borges-Rivera, Diego, Shachar, Sigal, Weintraub, Abraham S., Hnisz, Denes, Pegoraro, Gianluca, Lee, Tong Ihn, Misteli, Tom, Jaenisch, Rudolf, Young, Richard A.

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YY1 Is a Structural Regulator of Enhancer-Promoter Loops von Weintraub, Abraham S., Li, Charles H., Zamudio, Alicia V., Sigova, Alla A., Hannett, Nancy M., Day, Daniel S., Abraham, Brian J., Cohen, Malkiel A., Nabet, Behnam, Buckley, Dennis L., Guo, Yang Eric, Hnisz, Denes, Jaenisch, Rudolf, Bradner, James E., Gray, Nathanael S., Young, Richard A.

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Activation of proto-oncogenes by disruption of chromosome neighborhoods von Hnisz, Denes, Weintraub, Abraham S., Day, Daniel S., Valton, Anne-Laure, Bak, Rasmus O., Li, Charles H., Goldmann, Johanna, Lajoie, Bryan R., Fan, Zi Peng, Sigova, Alla A., Reddy, Jessica, Borges-Rivera, Diego, Lee, Tong Ihn, Jaenisch, Rudolf, Porteus, Matthew H., Dekker, Job, Young, Richard A.

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Recurrent somatic mutations in POLR2A define a distinct subset of meningiomas von Clark, Victoria E, Harmancı, Akdes Serin, Bai, Hanwen, Youngblood, Mark W, Lee, Tong Ihn, Baranoski, Jacob F, Ercan-Sencicek, A Gulhan, Abraham, Brian J, Weintraub, Abraham S, Hnisz, Denes, Simon, Matthias, Krischek, Boris, Erson-Omay, E Zeynep, Henegariu, Octavian, Carrión-Grant, Geneive, Mishra-Gorur, Ketu, Durán, Daniel, Goldmann, Johanna E, Schramm, Johannes, Goldbrunner, Roland, Piepmeier, Joseph M, Vortmeyer, Alexander O, Günel, Jennifer Moliterno, Bilgüvar, Kaya, Yasuno, Katsuhito, Young, Richard A, Günel, Murat

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Small genomic insertions form enhancers that misregulate oncogenes von Abraham, Brian J., Hnisz, Denes, Weintraub, Abraham S., Kwiatkowski, Nicholas, Li, Charles H., Li, Zhaodong, Weichert-Leahey, Nina, Rahman, Sunniyat, Liu, Yu, Etchin, Julia, Li, Benshang, Shen, Shuhong, Lee, Tong Ihn, Zhang, Jinghui, Look, A. Thomas, Mansour, Marc R., Young, Richard A.

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Regulatory architecture of housekeeping genes is driven by promoter assemblies von Dejosez, Marion, Dall’Agnese, Alessandra, Ramamoorthy, Mahesh, Platt, Jesse, Yin, Xing, Hogan, Megan, Brosh, Ran, Weintraub, Abraham S., Hnisz, Denes, Abraham, Brian J., Young, Richard A., Zwaka, Thomas P.

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PHF6 regulates phenotypic plasticity through chromatin organization within lineage-specific genes von Soto-Feliciano, Yadira M, Bartlebaugh, Jordan M E, Liu, Yunpeng, Sánchez-Rivera, Francisco J, Bhutkar, Arjun, Weintraub, Abraham S, Buenrostro, Jason D, Cheng, Christine S, Regev, Aviv, Jacks, Tyler E, Young, Richard A, Hemann, Michael T

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STAG2 loss rewires oncogenic and developmental programs to promote metastasis in Ewing sarcoma von Adane, Biniam, Alexe, Gabriela, Seong, Bo Kyung A., Lu, Diana, Hwang, Elizabeth E., Hnisz, Denes, Lareau, Caleb A., Ross, Linda, Lin, Shan, Dela Cruz, Filemon S., Richardson, Melissa, Weintraub, Abraham S., Wang, Sarah, Iniguez, Amanda Balboni, Dharia, Neekesh V., Conway, Amy Saur, Robichaud, Amanda L., Tanenbaum, Benjamin, Krill-Burger, John M., Vazquez, Francisca, Schenone, Monica, Berman, Jason N., Kung, Andrew L., Carr, Steven A., Aryee, Martin J., Young, Richard A., Crompton, Brian D., Stegmaier, Kimberly

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Abstract 2004: Nucleation of transcriptional super-enhancers at tumor oncogenes by small insertions von Abraham, Brian J., Hnisz, Denes, Weintraub, Abraham S., Kwiatkowski, Nicholas, Li, Charles H., Rahman, Sunniyat, Li, Zhaodong, Lee, Tong Ihn, Look, A Thomas, Mansour, Marc, Young, Richard A.

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Corrigendum: Small genomic insertions form enhancers that misregulate oncogenes von Abraham, Brian J, Hnisz, Denes, Weintraub, Abraham S, Kwiatkowski, Nicholas, Li, Charles H, Li, Zhaodong, Weichert-Leahey, Nina, Rahman, Sunniyat, Liu, Yu, Etchin, Julia, Li, Benshang, Shen, Shuhong, Lee, Tong Ihn, Zhang, Jinghui, Look, A Thomas, Mansour, Marc R, Young, Richard A

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Correction: Corrigendum: Small genomic insertions form enhancers that misregulate oncogenes von Abraham, Brian J., Hnisz, Denes, Weintraub, Abraham S., Kwiatkowski, Nicholas, Li, Charles H., Li, Zhaodong, Weichert-Leahey, Nina, Rahman, Sunniyat, Liu, Yu, Etchin, Julia, Li, Benshang, Shen, Shuhong, Lee, Tong Ihn, Zhang, Jinghui, Look, A. Thomas, Mansour, Marc R., Young, Richard A.

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Abstract 971: Three-dimensional gene regulatory landscapes in normal and cancer cells von Abraham, Brian J., Guo, Yang Eric, Hnisz, Denes, Li, Charles H., Weintraub, Abraham S., Day, Daniel S., Schuijers, Jurian, Lee, Tong Ihn, Young, Richard A.

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Abstract PR14: Nucleation of transcriptional super-enhancers at tumor oncogenes von Abraham, Brian J., Kwiatkowski, Nicholas, Weintraub, Abraham S., Hnisz, Denes, Hannett, Nancy, Young, Richard A.

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Abstract PR06: Nucleation of transcriptional super-enhancers at tumor oncogenes von Abraham, Brian J., Kwiatkowski, Nicholas, Weintraub, Abraham S., Hnisz, Denes, Hannett, Nancy, Young, Richard A.

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Abstract A44: The role of PHF6 in maintaining pre-B cell commitment in B-cell acute lymphoblastic leukemia von Soto-Feliciano, Yadira M., Bartlebaugh, Jordan ME, Liu, Yunpeng, Sánchez-Rivera, Francisco J., Weintraub, Abraham S., Bhutkar, Arjun, Jacks, Tyler E., Young, Richard A., Hemann, Michael T.

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METHODS OF ALTERING GENE EXPRESSION BY PERTURBING TRANSCRIPTION FACTOR MULTIMERS THAT STRUCTURE REGULATORY LOOPS von Young, Richard A, Weintraub, Abraham S, Li, Charles H, Sigova, Alla A

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REGULATION OF TRANSCRIPTION THROUGH CTCF LOOP ANCHORS von Young, Richard A, Weintraub, Abraham S, Manteiga, John C, Schuijers, Jurian

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Methods of altering gene expression by perturbing transcription factor multimers that structure regulatory loops von Young, Richard A, Weintraub, Abraham S, Li, Charles H, Sigova, Alla A

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