TANRIC: An Interactive Open Platform to Explore the Function of lncRNAs in Cancer von Li, Jun, Han, Leng, Roebuck, Paul, Diao, Lixia, Liu, Lingxiang, Yuan, Yuan, Weinstein, John N, Liang, Han

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Integrated Analysis of TP53 Gene and Pathway Alterations in The Cancer Genome Atlas von Donehower, Lawrence A., Soussi, Thierry, Korkut, Anil, Liu, Yuexin, Schultz, Andre, Cardenas, Maria, Li, Xubin, Babur, Ozgun, Hsu, Teng-Kuei, Lichtarge, Olivier, Weinstein, John N., Akbani, Rehan, Wheeler, David A.

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Distinct patterns of somatic genome alterations in lung adenocarcinomas and squamous cell carcinomas von Campbell, Joshua D, Alexandrov, Anton, Kim, Jaegil, Wala, Jeremiah, Berger, Alice H, Pedamallu, Chandra Sekhar, Shukla, Sachet A, Guo, Guangwu, Brooks, Angela N, Murray, Bradley A, Imielinski, Marcin, Hu, Xin, Ling, Shiyun, Akbani, Rehan, Rosenberg, Mara, Cibulskis, Carrie, Ramachandran, Aruna, Collisson, Eric A, Kwiatkowski, David J, Lawrence, Michael S, Weinstein, John N, Verhaak, Roel G W, Wu, Catherine J, Hammerman, Peter S, Cherniack, Andrew D, Getz, Gad, Artyomov, Maxim N, Schreiber, Robert, Govindan, Ramaswamy, Meyerson, Matthew

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Biomarkers in Cancer Staging, Prognosis and Treatment Selection von Weinstein, John N, Ludwig, Joseph A

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A Patient-Derived, Pan-Cancer EMT Signature Identifies Global Molecular Alterations and Immune Target Enrichment Following Epithelial-to-Mesenchymal Transition von Mak, Milena P, Tong, Pan, Diao, Lixia, Cardnell, Robert J, Gibbons, Don L, William, William N, Skoulidis, Ferdinandos, Parra, Edwin R, Rodriguez-Canales, Jaime, Wistuba, Ignacio I, Heymach, John V, Weinstein, John N, Coombes, Kevin R, Wang, Jing, Byers, Lauren Averett

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TCPA: a resource for cancer functional proteomics data von Li, Jun, Lu, Yiling, Akbani, Rehan, Ju, Zhenlin, Roebuck, Paul L, Liu, Wenbin, Yang, Ji-Yeon, Broom, Bradley M, Verhaak, Roeland G W, Kane, David W, Wakefield, Chris, Weinstein, John N, Mills, Gordon B, Liang, Han

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Whole-genome and multisector exome sequencing of primary and post-treatment glioblastoma reveals patterns of tumor evolution von Kim, Hoon, Zheng, Siyuan, Amini, Seyed S, Virk, Selene M, Mikkelsen, Tom, Brat, Daniel J, Grimsby, Jonna, Sougnez, Carrie, Muller, Florian, Hu, Jian, Sloan, Andrew E, Cohen, Mark L, Van Meir, Erwin G, Scarpace, Lisa, Laird, Peter W, Weinstein, John N, Lander, Eric S, Gabriel, Stacey, Getz, Gad, Meyerson, Matthew, Chin, Lynda, Barnholtz-Sloan, Jill S, Verhaak, Roel G W

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Invasive Bladder Cancer: Genomic Insights and Therapeutic Promise von Kim, Jaegil, Akbani, Rehan, Creighton, Chad J, Lerner, Seth P, Weinstein, John N, Getz, Gad, Kwiatkowski, David J

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CellMiner: a relational database and query tool for the NCI-60 cancer cell lines von Shankavaram, Uma T, Varma, Sudhir, Kane, David, Sunshine, Margot, Chary, Krishna K, Reinhold, William C, Pommier, Yves, Weinstein, John N

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An Epithelial―Mesenchymal Transition Gene Signature Predicts Resistance to EGFR and PI3K Inhibitors and Identifies Axl as a Therapeutic Target for Overcoming EGFR Inhibitor Resista... von AVERETT BYERS, Lauren, LIXIA DIAO, NILSSON, Monique B, GUDIKOTE, Jayanthi, TRAN, Hai, CARDNELL, Robert J. G, BEARSS, David J, WARNER, Steven L, FOULKS, Jason M, KANNER, Steven B, GANDHI, Varsha, KRETT, Nancy, JING WANG, ROSEN, Steven T, KIM, Edward S, HERBST, RoyS, BLUMENSCHEIN, George R, LEE, J. Jack, LIPPMAN, Scott M, KIAN ANG, K, MILLS, Gordon B, HONG, Waun K, WEINSTEIN, John N, SAINTIGNY, Pierre, WISTUBA, Ignacio I, COOMBES, Kevin R, MINNA, John D, HEYMACH, John V, GIRARD, Luc, PEYTON, Michael, LI SHEN, YOUHONG FAN, GIRI, Uma, TUMULA, Praveen K

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A pan-cancer proteomic perspective on The Cancer Genome Atlas von Akbani, Rehan, Ng, Patrick Kwok Shing, Werner, Henrica M. J., Shahmoradgoli, Maria, Zhang, Fan, Ju, Zhenlin, Liu, Wenbin, Yang, Ji-Yeon, Yoshihara, Kosuke, Li, Jun, Ling, Shiyun, Seviour, Elena G., Ram, Prahlad T., Minna, John D., Diao, Lixia, Tong, Pan, Heymach, John V., Hill, Steven M., Dondelinger, Frank, Städler, Nicolas, Byers, Lauren A., Meric-Bernstam, Funda, Weinstein, John N., Broom, Bradley M., Verhaak, Roeland G. W., Liang, Han, Mukherjee, Sach, Lu, Yiling, Mills, Gordon B.

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PRADA: pipeline for RNA sequencing data analysis von Torres-García, Wandaliz, Zheng, Siyuan, Sivachenko, Andrey, Vegesna, Rahulsimham, Wang, Qianghu, Yao, Rong, Berger, Michael F, Weinstein, John N, Getz, Gad, Verhaak, Roel G W

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Assessing the clinical utility of cancer genomic and proteomic data across tumor types von Yuan, Yuan, Van Allen, Eliezer M, Omberg, Larsson, Wagle, Nikhil, Amin-Mansour, Ali, Sokolov, Artem, Byers, Lauren A, Xu, Yanxun, Hess, Kenneth R, Diao, Lixia, Han, Leng, Huang, Xuelin, Lawrence, Michael S, Weinstein, John N, Stuart, Josh M, Mills, Gordon B, Garraway, Levi A, Margolin, Adam A, Getz, Gad, Liang, Han

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Comprehensive analysis of long non-coding RNAs in human breast cancer clinical subtypes von Su, Xiaoping, Malouf, Gabriel G, Chen, Yunxin, Zhang, Jianping, Yao, Hui, Valero, Vicente, Weinstein, John N, Spano, Jean-Philippe, Meric-Bernstam, Funda, Khayat, David, Esteva, Francisco J

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Integrated Analysis of TP53 Gene and Pathway Alterations in The Cancer Genome Atlas von Donehower, Lawrence A., Soussi, Thierry, Korkut, Anil, Liu, Yuexin, Schultz, Andre, Cardenas, Maria, Li, Xubin, Babur, Ozgun, Hsu, Teng-Kuei, Lichtarge, Olivier, Weinstein, John N., Akbani, Rehan, Wheeler, David A.

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Landscape of DNA Virus Associations across Human Malignant Cancers: Analysis of 3,775 Cases Using RNA-Seq von Khoury, Joseph D, Tannir, Nizar M, Williams, Michelle D, Chen, Yunxin, Yao, Hui, Zhang, Jianping, Thompson, Erika J, Meric-Bernstam, Funda, Medeiros, L Jeffrey, Weinstein, John N, Su, Xiaoping

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An Artifact in LC-MS/MS Measurement of Glutamine and Glutamic Acid: In-Source Cyclization to Pyroglutamic Acid von Purwaha, Preeti, Silva, Leslie P, Hawke, David H, Weinstein, John N, Lorenzi, Philip L

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Proteomic profiling identifies dysregulated pathways in small cell lung cancer and novel therapeutic targets including PARP1 von Byers, Lauren Averett, Wang, Jing, Nilsson, Monique B, Fujimoto, Junya, Saintigny, Pierre, Yordy, John, Giri, Uma, Peyton, Michael, Fan, You Hong, Diao, Lixia, Masrorpour, Fatemeh, Shen, Li, Liu, Wenbin, Duchemann, Boris, Tumula, Praveen, Bhardwaj, Vikas, Welsh, James, Weber, Stephanie, Glisson, Bonnie S, Kalhor, Neda, Wistuba, Ignacio I, Girard, Luc, Lippman, Scott M, Mills, Gordon B, Coombes, Kevin R, Weinstein, John N, Minna, John D, Heymach, John V

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Meta-Analysis of the Luminal and Basal Subtypes of Bladder Cancer and the Identification of Signature Immunohistochemical Markers for Clinical Use von Dadhania, Vipulkumar, Zhang, Miao, Zhang, Li, Bondaruk, Jolanta, Majewski, Tadeusz, Siefker-Radtke, Arlene, Guo, Charles C., Dinney, Colin, Cogdell, David E., Zhang, Shizhen, Lee, Sangkyou, Lee, June G., Weinstein, John N., Baggerly, Keith, McConkey, David, Czerniak, Bogdan

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Integrative genomic characterization of oral squamous cell carcinoma identifies frequent somatic drivers von Pickering, Curtis R, Zhang, Jiexin, Yoo, Suk Young, Bengtsson, Linnea, Moorthy, Shhyam, Neskey, David M, Zhao, Mei, Ortega Alves, Marcus V, Chang, Kyle, Drummond, Jennifer, Cortez, Elsa, Xie, Tong-Xin, Zhang, Di, Chung, Woonbok, Issa, Jean-Pierre J, Zweidler-McKay, Patrick A, Wu, Xifeng, El-Naggar, Adel K, Weinstein, John N, Wang, Jing, Muzny, Donna M, Gibbs, Richard A, Wheeler, David A, Myers, Jeffrey N, Frederick, Mitchell J

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