Genome-wide analysis of noncoding regulatory mutations in cancer von Weinhold, Nils, Jacobsen, Anders, Schultz, Nikolaus, Sander, Chris, Lee, William

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Genetic diversity of tumors with mismatch repair deficiency influences anti–PD-1 immunotherapy response von Mandal, Rajarsi, Samstein, Robert M., Lee, Ken-Wing, Havel, Jonathan J., Wang, Hao, Krishna, Chirag, Sabio, Erich Y., Makarov, Vladimir, Kuo, Fengshen, Blecua, Pedro, Ramaswamy, Apoorva T., Durham, Jennifer N., Bartlett, Bjarne, Ma, Xiaoxiao, Srivastava, Raghvendra, Middha, Sumit, Zehir, Ahmet, Hechtman, Jaclyn F., Morris, Luc GT, Weinhold, Nils, Riaz, Nadeem, Le, Dung T., Diaz, Luis A., Chan, Timothy A.

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Pan-cancer analysis of bi-allelic alterations in homologous recombination DNA repair genes von Riaz, Nadeem, Blecua, Pedro, Lim, Raymond S., Shen, Ronglai, Higginson, Daniel S., Weinhold, Nils, Norton, Larry, Weigelt, Britta, Powell, Simon N., Reis-Filho, Jorge S.

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Improved prediction of immune checkpoint blockade efficacy across multiple cancer types von Chowell, Diego, Yoo, Seong-Keun, Valero, Cristina, Pastore, Alessandro, Krishna, Chirag, Lee, Mark, Hoen, Douglas, Shi, Hongyu, Kelly, Daniel W., Patel, Neal, Makarov, Vladimir, Ma, Xiaoxiao, Vuong, Lynda, Sabio, Erich Y., Weiss, Kate, Kuo, Fengshen, Lenz, Tobias L., Samstein, Robert M., Riaz, Nadeem, Adusumilli, Prasad S., Balachandran, Vinod P., Plitas, George, Ari Hakimi, A., Abdel-Wahab, Omar, Shoushtari, Alexander N., Postow, Michael A., Motzer, Robert J., Ladanyi, Marc, Zehir, Ahmet, Berger, Michael F., Gönen, Mithat, Morris, Luc G. T., Weinhold, Nils, Chan, Timothy A.

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Tumor immune microenvironment characterization in clear cell renal cell carcinoma identifies prognostic and immunotherapeutically relevant messenger RNA signatures von Şenbabaoğlu, Yasin, Gejman, Ron S, Winer, Andrew G, Liu, Ming, Van Allen, Eliezer M, de Velasco, Guillermo, Miao, Diana, Ostrovnaya, Irina, Drill, Esther, Luna, Augustin, Weinhold, Nils, Lee, William, Manley, Brandon J, Khalil, Danny N, Kaffenberger, Samuel D, Chen, Yingbei, Danilova, Ludmila, Voss, Martin H, Coleman, Jonathan A, Russo, Paul, Reuter, Victor E, Chan, Timothy A, Cheng, Emily H, Scheinberg, David A, Li, Ming O, Choueiri, Toni K, Hsieh, James J, Sander, Chris, Hakimi, A Ari

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Exonuclease mutations in DNA polymerase epsilon reveal replication strand specific mutation patterns and human origins of replication von Shinbrot, Eve, Henninger, Erin E, Weinhold, Nils, Covington, Kyle R, Göksenin, A Yasemin, Schultz, Nikolaus, Chao, Hsu, Doddapaneni, HarshaVardhan, Muzny, Donna M, Gibbs, Richard A, Sander, Chris, Pursell, Zachary F, Wheeler, David A

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Prevalence and Co-Occurrence of Actionable Genomic Alterations in High-Grade Bladder Cancer von IYER, Gopa, AL-AHMADIE, Hikmat, ZABOR, Emily C, JANAKIRAMAN, Manickam, GARCIA-GROSSMAN, Ilana R, HEGUY, Adriana, VIALE, Agnes, BOCHNER, Bernard H, REUTER, Victor E, BAJORIN, Dean F, MILOWSKY, Matthew I, TAYLOR, Barry S, SCHULTZ, Nikolaus, SOLIT, David B, HANRAHAN, Aphrothiti J, OSTROVNAYA, Irina, BALAR, Arjun V, KIM, Philip H, LIN, Oscar, WEINHOLD, Nils, SANDER, Chris

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Protein-Protein interactions uncover candidate ‘core genes’ within omnigenic disease networks von Ratnakumar, Abhirami, Weinhold, Nils, Mar, Jessica C, Riaz, Nadeem, Barsh, Gregory S, Liu, Xuanyao

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The SWI/SNF Protein PBRM1 Restrains VHL-Loss-Driven Clear Cell Renal Cell Carcinoma von Nargund, Amrita M., Pham, Can G., Dong, Yiyu, Wang, Patricia I., Osmangeyoglu, Hatice U., Xie, Yuchen, Aras, Omer, Han, Song, Oyama, Toshinao, Takeda, Shugaku, Ray, Chelsea E., Dong, Zhenghong, Berge, Mathieu, Hakimi, A. Ari, Monette, Sebastien, Lekaye, Carl L., Koutcher, Jason A., Leslie, Christina S., Creighton, Chad J., Weinhold, Nils, Lee, William, Tickoo, Satish K., Wang, Zhong, Cheng, Emily H., Hsieh, James J.

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RAD52 resolves transcription-replication conflicts to mitigate R-loop induced genome instability von Jalan, Manisha, Sharma, Aman, Pei, Xin, Weinhold, Nils, Buechelmaier, Erika S., Zhu, Yingjie, Ahmed-Seghir, Sana, Ratnakumar, Abhirami, Di Bona, Melody, McDermott, Niamh, Gomez-Aguilar, Joan, Anderson, Kyrie S., Ng, Charlotte K. Y., Selenica, Pier, Bakhoum, Samuel F., Reis-Filho, Jorge S., Riaz, Nadeem, Powell, Simon N.

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DNA methyltransferase 1 and DNA methylation patterning contribute to germinal center B-cell differentiation von Shaknovich, Rita, Cerchietti, Leandro, Tsikitas, Lucas, Kormaksson, Matthias, De, Subhajyoti, Figueroa, Maria E., Ballon, Gianna, Yang, Shao Ning, Weinhold, Nils, Reimers, Mark, Clozel, Thomas, Luttrop, Karin, Ekstrom, Tomas J., Frank, Jared, Vasanthakumar, Aparna, Godley, Lucy A., Michor, Franziska, Elemento, Olivier, Melnick, Ari

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p53-intact cancers escape tumor suppression through loss of long noncoding RNA Dino von Marney, Christina B., Anderson, Erik S., Adnan, Mutayyaba, Peng, Kai-Lin, Hu, Ya, Weinhold, Nils, Schmitt, Adam M.

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The impact of the protein interactome on the syntenic structure of mammalian genomes von Kirk, Isa Kristina, Weinhold, Nils, Brunak, Søren, Belling, Kirstine

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Genomic landscape and evolution of metastatic chromophobe renal cell carcinoma von Casuscelli, Jozefina, Weinhold, Nils, Gundem, Gunes, Wang, Lu, Zabor, Emily C, Drill, Esther, Wang, Patricia I, Nanjangud, Gouri J, Redzematovic, Almedina, Nargund, Amrita M, Manley, Brandon J, Arcila, Maria E, Donin, Nicholas M, Cheville, John C, Thompson, R Houston, Pantuck, Allan J, Russo, Paul, Cheng, Emily H, Lee, William, Tickoo, Satish K, Ostrovnaya, Irina, Creighton, Chad J, Papaemmanuil, Elli, Seshan, Venkatraman E, Hakimi, A Ari, Hsieh, James J

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Systematic characterisation of cellular localisation and expression profiles of proteins containing MHC ligands von Juncker, Agnieszka S, Larsen, Mette V, Weinhold, Nils, Nielsen, Morten, Brunak, Søren, Lund, Ole

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Deciphering diseases and biological targets for environmental chemicals using toxicogenomics networks von Audouze, Karine, Juncker, Agnieszka Sierakowska, Roque, Francisco J S S A, Krysiak-Baltyn, Konrad, Weinhold, Nils, Taboureau, Olivier, Jensen, Thomas Skøt, Brunak, Søren

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Tumor and Microenvironment Evolution during Immunotherapy with Nivolumab von Riaz, Nadeem, Havel, Jonathan J., Makarov, Vladimir, Desrichard, Alexis, Urba, Walter J., Sims, Jennifer S., Hodi, F. Stephen, Martín-Algarra, Salvador, Mandal, Rajarsi, Sharfman, William H., Bhatia, Shailender, Hwu, Wen-Jen, Gajewski, Thomas F., Slingluff, Craig L., Chowell, Diego, Kendall, Sviatoslav M., Chang, Han, Shah, Rachna, Kuo, Fengshen, Morris, Luc G.T., Sidhom, John-William, Schneck, Jonathan P., Horak, Christine E., Weinhold, Nils, Chan, Timothy A.

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Comprehensive molecular characterization of gastric adenocarcinoma von Bass, Adam J

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Local function conservation in sequence and structure space von Weinhold, Nils, Sander, Oliver, Domingues, Francisco S, Lengauer, Thomas, Sommer, Ingolf

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Recurrent SERPINB3 and SERPINB4 mutations in patients who respond to anti-CTLA4 immunotherapy von Riaz, Nadeem, Havel, Jonathan J, Kendall, Sviatoslav M, Makarov, Vladimir, Walsh, Logan A, Desrichard, Alexis, Weinhold, Nils, Chan, Timothy A

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