PubTator central: automated concept annotation for biomedical full text articles von Wei, Chih-Hsuan, Allot, Alexis, Leaman, Robert, Lu, Zhiyong

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PubTator: a web-based text mining tool for assisting biocuration von Wei, Chih-Hsuan, Kao, Hung-Yu, Lu, Zhiyong

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BioRED: a rich biomedical relation extraction dataset von Luo, Ling, Lai, Po-Ting, Wei, Chih-Hsuan, Arighi, Cecilia N, Lu, Zhiyong

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GNormPlus: An Integrative Approach for Tagging Genes, Gene Families, and Protein Domains von Wei, Chih-Hsuan, Lu, Zhiyong, Kao, Hung-Yu

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BioConceptVec: Creating and evaluating literature-based biomedical concept embeddings on a large scale von Chen Qingyu, Lee, Kyubum, Yan Shankai, Kim, Sun, Wei Chih-Hsuan, Lu Zhiyong

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tmChem: a high performance approach for chemical named entity recognition and normalization von Leaman, Robert, Wei, Chih-Hsuan, Lu, Zhiyong

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BioCreative V CDR task corpus: a resource for chemical disease relation extraction von Li, Jiao, Sun, Yueping, Johnson, Robin J, Sciaky, Daniela, Wei, Chih-Hsuan, Leaman, Robert, Davis, Allan Peter, Mattingly, Carolyn J, Wiegers, Thomas C, Lu, Zhiyong

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LitVar: a semantic search engine for linking genomic variant data in PubMed and PMC von Allot, Alexis, Peng, Yifan, Wei, Chih-Hsuan, Lee, Kyubum, Phan, Lon, Lu, Zhiyong

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tmVar: a text mining approach for extracting sequence variants in biomedical literature von Wei, Chih-Hsuan, Harris, Bethany R, Kao, Hung-Yu, Lu, Zhiyong

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Ten tips for a text-mining-ready article: How to improve automated discoverability and interpretability von Leaman, Robert, Wei, Chih-Hsuan, Allot, Alexis, Lu, Zhiyong

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Assessing the state of the art in biomedical relation extraction: overview of the BioCreative V chemical-disease relation (CDR) task von Wei, Chih-Hsuan, Peng, Yifan, Leaman, Robert, Davis, Allan Peter, Mattingly, Carolyn J, Li, Jiao, Wiegers, Thomas C, Lu, Zhiyong

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Scaling up data curation using deep learning: An application to literature triage in genomic variation resources von Lee, Kyubum, Famiglietti, Maria Livia, McMahon, Aoife, Wei, Chih-Hsuan, MacArthur, Jacqueline Ann Langdon, Poux, Sylvain, Breuza, Lionel, Bridge, Alan, Cunningham, Fiona, Xenarios, Ioannis, Lu, Zhiyong

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SR4GN: a species recognition software tool for gene normalization von Wei, Chih-Hsuan, Kao, Hung-Yu, Lu, Zhiyong

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Large-scale event extraction from literature with multi-level gene normalization von Van Landeghem, Sofie, Björne, Jari, Wei, Chih-Hsuan, Hakala, Kai, Pyysalo, Sampo, Ananiadou, Sophia, Kao, Hung-Yu, Lu, Zhiyong, Salakoski, Tapio, Van de Peer, Yves, Ginter, Filip

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NLM-Chem, a new resource for chemical entity recognition in PubMed full text literature von Islamaj, Rezarta, Leaman, Robert, Kim, Sun, Kwon, Dongseop, Wei, Chih-Hsuan, Comeau, Donald C., Peng, Yifan, Cissel, David, Coss, Cathleen, Fisher, Carol, Guzman, Rob, Kochar, Preeti Gokal, Koppel, Stella, Trinh, Dorothy, Sekiya, Keiko, Ward, Janice, Whitman, Deborah, Schmidt, Susan, Lu, Zhiyong

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SimConcept: A Hybrid Approach for Simplifying Composite Named Entities in Biomedical Text von Chih-Hsuan Wei, Leaman, Robert, Zhiyong Lu

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tmVar 2.0: integrating genomic variant information from literature with dbSNP and ClinVar for precision medicine von Wei, Chih-Hsuan, Phan, Lon, Feltz, Juliana, Maiti, Rama, Hefferon, Tim, Lu, Zhiyong

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Overview of the BioCreative VI Precision Medicine Track: mining protein interactions and mutations for precision medicine von Islamaj Doğan, Rezarta, Kim, Sun, Chatr-aryamontri, Andrew, Wei, Chih-Hsuan, Comeau, Donald C, Antunes, Rui, Matos, Sérgio, Chen, Qingyu, Elangovan, Aparna, Panyam, Nagesh C, Verspoor, Karin, Liu, Hongfang, Wang, Yanshan, Liu, Zhuang, Altınel, Berna, Hüsünbeyi, Zehra Melce, Özgür, Arzucan, Fergadis, Aris, Wang, Chen-Kai, Dai, Hong-Jie, Tran, Tung, Kavuluru, Ramakanth, Luo, Ling, Steppi, Albert, Zhang, Jinfeng, Qu, Jinchan, Lu, Zhiyong

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Beyond accuracy: creating interoperable and scalable text-mining web services von Wei, Chih-Hsuan, Leaman, Robert, Lu, Zhiyong

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tmVar 3.0: an improved variant concept recognition and normalization tool von Wei, Chih-Hsuan, Allot, Alexis, Riehle, Kevin, Milosavljevic, Aleksandar, Lu, Zhiyong

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