mRNA structure determines specificity of a polyQ-driven phase separation von Langdon, Erin M, Qiu, Yupeng, Ghanbari Niaki, Amirhossein, McLaughlin, Grace A, Weidmann, Chase A, Gerbich, Therese M, Smith, Jean A, Crutchley, John M, Termini, Christina M, Weeks, Kevin M, Myong, Sua, Gladfelter, Amy S

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Selective 2′-hydroxyl acylation analyzed by primer extension and mutational profiling (SHAPE-MaP) for direct, versatile and accurate RNA structure analysis von Smola, Matthew J, Rice, Greggory M, Busan, Steven, Siegfried, Nathan A, Weeks, Kevin M

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Pervasive Regulatory Functions of mRNA Structure Revealed by High-Resolution SHAPE Probing von Mustoe, Anthony M., Busan, Steven, Rice, Greggory M., Hajdin, Christine E., Peterson, Brant K., Ruda, Vera M., Kubica, Neil, Nutiu, Razvan, Baryza, Jeremy L., Weeks, Kevin M.

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RNA motif discovery by SHAPE and mutational profiling (SHAPE-MaP) von Siegfried, Nathan A, Busan, Steven, Rice, Greggory M, Nelson, Julie A E, Weeks, Kevin M

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Genomic RNA Elements Drive Phase Separation of the SARS-CoV-2 Nucleocapsid von Iserman, Christiane, Roden, Christine A., Boerneke, Mark A., Sealfon, Rachel S.G., McLaughlin, Grace A., Jungreis, Irwin, Fritch, Ethan J., Hou, Yixuan J., Ekena, Joanne, Weidmann, Chase A., Theesfeld, Chandra L., Kellis, Manolis, Troyanskaya, Olga G., Baric, Ralph S., Sheahan, Timothy P., Weeks, Kevin M., Gladfelter, Amy S.

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SHAPE-directed RNA secondary structure prediction von Low, Justin T., Weeks, Kevin M.

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Selective 2′-hydroxyl acylation analyzed by primer extension (SHAPE): quantitative RNA structure analysis at single nucleotide resolution von Weeks, Kevin M, Wilkinson, Kevin A, Merino, Edward J

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Functional classification of long non-coding RNAs by k-mer content von Kirk, Jessime M., Kim, Susan O., Inoue, Kaoru, Smola, Matthew J., Lee, David M., Schertzer, Megan D., Wooten, Joshua S., Baker, Allison R., Sprague, Daniel, Collins, David W., Horning, Christopher R., Wang, Shuo, Chen, Qidi, Weeks, Kevin M., Mucha, Peter J., Calabrese, J. Mauro

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Accurate SHAPE-directed RNA structure determination von Deigan, Katherine E, Li, Tian W, Mathews, David H, Weeks, Kevin M

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Accurate SHAPE-directed RNA secondary structure modeling, including pseudoknots von Hajdin, Christine E., Bellaousov, Stanislav, Huggins, Wayne, Leonard, Christopher W., Mathews, David H., Weeks, Kevin M.

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Single-molecule correlated chemical probing reveals large-scale structural communication in the ribosome and the mechanism of the antibiotic spectinomycin in living cells von Sengupta, Arnab, Rice, Greggory M, Weeks, Kevin M

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Visualization of RNA structure models within the Integrative Genomics Viewer von Busan, Steven, Weeks, Kevin M

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Architecture and secondary structure of an entire HIV-1 RNA genome von Weeks, Kevin M, Swanstrom, Ronald, Bess Jr, Julian W, Watts, Joseph M, Burch, Christina L, Leonard, Christopher W, Dang, Kristen K, Gorelick, Robert J

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Functionally conserved architecture of hepatitis C virus RNA genomes von Mauger, David M., Golden, Michael, Yamane, Daisuke, Williford, Sara, Lemon, Stanley M., Martin, Darren P., Weeks, Kevin M.

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High-throughput SHAPE analysis reveals structures in HIV-1 genomic RNA strongly conserved across distinct biological states von Wilkinson, Kevin A, Gorelick, Robert J, Vasa, Suzy M, Guex, Nicolas, Rein, Alan, Mathews, David H, Giddings, Morgan C, Weeks, Kevin M

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A Fast-Acting Reagent for Accurate Analysis of RNA Secondary and Tertiary Structure by SHAPE Chemistry von Mortimer, Stefanie A, Weeks, Kevin M

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Challenge of Mimicking the Influences of the Cellular Environment on RNA Structure by PEG-Induced Macromolecular Crowding von Tyrrell, Jillian, Weeks, Kevin M, Pielak, Gary J

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Single-molecule correlated chemical probing of RNA von Homan, Philip J., Favorov, Oleg V., Lavender, Christopher A., Kursun, Olcay, Ge, Xiyuan, Busan, Steven, Dokholyan, Nikolay V., Weeks, Kevin M.

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ShapeFinder: a software system for high-throughput quantitative analysis of nucleic acid reactivity information resolved by capillary electrophoresis von Vasa, Suzy M, Guex, Nicolas, Wilkinson, Kevin A, Weeks, Kevin M, Giddings, Morgan C

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Double-stranded RNA drives SARS-CoV-2 nucleocapsid protein to undergo phase separation at specific temperatures von Roden, Christine A, Dai, Yifan, Giannetti, Catherine A, Seim, Ian, Lee, Myungwoon, Sealfon, Rachel, McLaughlin, Grace A, Boerneke, Mark A, Iserman, Christiane, Wey, Samuel A, Ekena, Joanne L, Troyanskaya, Olga G, Weeks, Kevin M, You, Lingchong, Chilkoti, Ashutosh, Gladfelter, Amy S

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