BUSCO Applications from Quality Assessments to Gene Prediction and Phylogenomics von Waterhouse, Robert M, Seppey, Mathieu, Simão, Felipe A, Manni, Mosè, Ioannidis, Panagiotis, Klioutchnikov, Guennadi, Kriventseva, Evgenia V, Zdobnov, Evgeny M

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OrthoDB v9.1: cataloging evolutionary and functional annotations for animal, fungal, plant, archaeal, bacterial and viral orthologs von Zdobnov, Evgeny M, Tegenfeldt, Fredrik, Kuznetsov, Dmitry, Waterhouse, Robert M, Simão, Felipe A, Ioannidis, Panagiotis, Seppey, Mathieu, Loetscher, Alexis, Kriventseva, Evgenia V

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OrthoDB: a hierarchical catalog of animal, fungal and bacterial orthologs von Waterhouse, Robert M, Tegenfeldt, Fredrik, Li, Jia, Zdobnov, Evgeny M, Kriventseva, Evgenia V

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OrthoDB v8: update of the hierarchical catalog of orthologs and the underlying free software von Kriventseva, Evgenia V, Tegenfeldt, Fredrik, Petty, Tom J, Waterhouse, Robert M, Simão, Felipe A, Pozdnyakov, Igor A, Ioannidis, Panagiotis, Zdobnov, Evgeny M

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CrowdGO: Machine learning and semantic similarity guided consensus Gene Ontology annotation von Reijnders, Maarten J M F, Waterhouse, Robert M

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Extensive introgression in a malaria vector species complex revealed by phylogenomics von Fontaine, Michael C., Pease, James B., Steele, Aaron, Waterhouse, Robert M., Neafsey, Daniel E., Sharakhov, Igor V., Jiang, Xiaofang, Hall, Andrew B., Catteruccia, Flaminia, Kakani, Evdoxia, Mitchell, Sara N., Wu, Yi-Chieh, Smith, Hilary A., Love, R. Rebecca, Lawniczak, Mara K., Slotman, Michel A., Emrich, Scott J., Hahn, Matthew W., Besansky, Nora J.

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Evolutionary Dynamics of Abundant Stop Codon Readthrough von Jungreis, Irwin, Chan, Clara S, Waterhouse, Robert M, Fields, Gabriel, Lin, Michael F, Kellis, Manolis

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Anopheles mosquitoes reveal new principles of 3D genome organization in insects von Lukyanchikova, Varvara, Nuriddinov, Miroslav, Belokopytova, Polina, Taskina, Alena, Liang, Jiangtao, Reijnders, Maarten J. M. F., Ruzzante, Livio, Feron, Romain, Waterhouse, Robert M., Wu, Yang, Mao, Chunhong, Tu, Zhijian, Sharakhov, Igor V., Fishman, Veniamin

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Mycobacterium abscessus resists the innate cellular response by surviving cell lysis of infected phagocytes von Touré, Hamadoun, Galindo, Lee Ann, Lagune, Marion, Glatigny, Simon, Waterhouse, Robert M, Guénal, Isabelle, Herrmann, Jean-Louis, Girard-Misguich, Fabienne, Szuplewski, Sébastien

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OrthoDB: the hierarchical catalog of eukaryotic orthologs in 2011 von Waterhouse, Robert M, Zdobnov, Evgeny M, Tegenfeldt, Fredrik, Li, Jia, Kriventseva, Evgenia V

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Anopheles coluzzii stearoyl-CoA desaturase is essential for adult female survival and reproduction upon blood feeding von Ferdous, Zannatul, Fuchs, Silke, Behrends, Volker, Trasanidis, Nikolaos, Waterhouse, Robert M., Vlachou, Dina, Christophides, George K.

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Rapid evolution of mitochondrion-related genes in haplodiploid arthropods von Li, Yiyuan, Thomas, Gregg W C, Richards, Stephen, Waterhouse, Robert M, Zhou, Xin, Pfrender, Michael E

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Evolution of sexual traits influencing vectorial capacity in anopheline mosquitoes von Mitchell, Sara N., Kakani, Evdoxia G., South, Adam, Howell, Paul I., Waterhouse, Robert M., Catteruccia, Flaminia

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Genomic signatures accompanying the dietary shift to phytophagy in polyphagan beetles von Seppey, Mathieu, Ioannidis, Panagiotis, Emerson, Brent C, Pitteloud, Camille, Robinson-Rechavi, Marc, Roux, Julien, Escalona, Hermes E, McKenna, Duane D, Misof, Bernhard, Shin, Seunggwan, Zhou, Xin, Waterhouse, Robert M, Alvarez, Nadir

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BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs von Simão, Felipe A, Waterhouse, Robert M, Ioannidis, Panagiotis, Kriventseva, Evgenia V, Zdobnov, Evgeny M

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Four myriapod relatives - but who are sisters? No end to debates on relationships among the four major myriapod subgroups von Szucsich, Nikolaus U., Bartel, Daniela, Blanke, Alexander, Boehm, Alexander, Donath, Alexander, Fukui, Makiko, Grove, Simon, Liu, Shanlin, Macek, Oliver, Machida, Ryuichiro, Misof, Bernhard, Nakagaki, Yasutaka, Podsiadlowski, Lars, Sekiya, Kaoru, Tomizuka, Shigekazu, Von Reumont, Bjoern M., Waterhouse, Robert M., Walzl, Manfred, Meng, Guanliang, Zhou, Xin, Pass, Guenther, Meusemann, Karen

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DrosOMA: the Drosophila Orthologous Matrix browser [version 2; peer review: 4 approved] von Thiébaut, Antonin, Altenhoff, Adrian M., Campli, Giulia, Glover, Natasha, Dessimoz, Christophe, Waterhouse, Robert M.

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Nuclear Orthologs Derived from Whole Genome Sequencing Indicate Cryptic Diversity in the Bemisia tabaci (Insecta: Aleyrodidae) Complex of Whiteflies von de Moya, Robert S., Brown, Judith K., Sweet, Andrew D., Walden, Kimberly K. O., Paredes-Montero, Jorge R., Waterhouse, Robert M., Johnson, Kevin P.

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Sequence-structure-function relations of the mosquito leucine-rich repeat immune proteins von Waterhouse, Robert M, Povelones, Michael, Christophides, George K

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Insights Into an Unexplored Component of the Mosquito Repeatome: Distribution and Variability of Viral Sequences Integrated Into the Genome of the Arboviral Vector Aedes albopictus von Pischedda, Elisa, Scolari, Francesca, Valerio, Federica, Carballar-Lejarazú, Rebeca, Catapano, Paolo Luigi, Waterhouse, Robert M, Bonizzoni, Mariangela

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