BUSCO Applications from Quality Assessments to Gene Prediction and Phylogenomics von Waterhouse, Robert M, Seppey, Mathieu, Simão, Felipe A, Manni, Mosè, Ioannidis, Panagiotis, Klioutchnikov, Guennadi, Kriventseva, Evgenia V, Zdobnov, Evgeny M

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OrthoDB v9.1: cataloging evolutionary and functional annotations for animal, fungal, plant, archaeal, bacterial and viral orthologs von Zdobnov, Evgeny M, Tegenfeldt, Fredrik, Kuznetsov, Dmitry, Waterhouse, Robert M, Simão, Felipe A, Ioannidis, Panagiotis, Seppey, Mathieu, Loetscher, Alexis, Kriventseva, Evgenia V

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BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs von Simão, Felipe A, Waterhouse, Robert M, Ioannidis, Panagiotis, Kriventseva, Evgenia V, Zdobnov, Evgeny M

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OrthoDB: a hierarchical catalog of animal, fungal and bacterial orthologs von Waterhouse, Robert M, Tegenfeldt, Fredrik, Li, Jia, Zdobnov, Evgeny M, Kriventseva, Evgenia V

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Convergent evolution of venom gland transcriptomes across Metazoa von Zancolli, Giulia, Reijnders, Maarten, Waterhouse, Robert M, Robinson-Rechavi, Marc

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OrthoDB v8: update of the hierarchical catalog of orthologs and the underlying free software von Kriventseva, Evgenia V, Tegenfeldt, Fredrik, Petty, Tom J, Waterhouse, Robert M, Simão, Felipe A, Pozdnyakov, Igor A, Ioannidis, Panagiotis, Zdobnov, Evgeny M

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CrowdGO: Machine learning and semantic similarity guided consensus Gene Ontology annotation von Reijnders, Maarten J M F, Waterhouse, Robert M

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Biodiversity: an atlas of European reference genomes von Mazzoni, Camila J., Ciofi, Claudio, Waterhouse, Robert M.

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Extensive introgression in a malaria vector species complex revealed by phylogenomics von Fontaine, Michael C., Pease, James B., Steele, Aaron, Waterhouse, Robert M., Neafsey, Daniel E., Sharakhov, Igor V., Jiang, Xiaofang, Hall, Andrew B., Catteruccia, Flaminia, Kakani, Evdoxia, Mitchell, Sara N., Wu, Yi-Chieh, Smith, Hilary A., Love, R. Rebecca, Lawniczak, Mara K., Slotman, Michel A., Emrich, Scott J., Hahn, Matthew W., Besansky, Nora J.

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Investigating the Evolution of Drosophila STING-Dependent Antiviral Innate Immunity by Multispecies Comparison of 2′3′-cGAMP Responses von Hédelin, Léna, Thiébaut, Antonin, Huang, Jingxian, Li, Xiaoyan, Lemoine, Aurélie, Haas, Gabrielle, Meignin, Carine, Cai, Hua, Waterhouse, Robert M, Martins, Nelson, Imler, Jean-Luc

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The molecular toll pathway repertoire in anopheline mosquitoes von Rhodes, Victoria L., Waterhouse, Robert M., Michel, Kristin

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Mosquito  saliva enhances virus infection through sialokinin-dependent vascular leakage von Lefteri, Daniella A, Bryden, Steven R, Pingen, Marieke, Terry, Sandra, McCafferty, Ailish, Beswick, Emily F, Georgiev, Georgi, Van der Laan, Marleen, Mastrullo, Valeria, Campagnolo, Paola, Waterhouse, Robert M, Varjak, Margus, Merits, Andres, Fragkoudis, Rennos, Griffin, Stephen, Shams, Kave, Pondeville, Emilie, McKimmie, Clive S

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Assessing species coverage and assembly quality of rapidly accumulating sequenced genomes von Feron, Romain, Waterhouse, Robert M

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Phylogenomics and the evolution of hemipteroid insects von Johnson, Kevin P., Dietrich, Christopher H., Friedrich, Frank, Beutel, Rolf G., Wipfler, Benjamin, Peters, Ralph S., Allen, Julie M., Petersen, Malte, Donath, Alexander, Walden, Kimberly K. O., Kozlov, Alexey M., Podsiadlowski, Lars, Mayer, Christoph, Meusemann, Karen, Vasilikopoulos, Alexandros, Waterhouse, Robert M., Cameron, Stephen L., Weirauch, Christiane, Swanson, Daniel R., Percy, Diana M., Hardy, Nate B., Terry, Irene, Liu, Shanlin, Zhou, Xin, Misof, Bernhard, Robertson, Hugh M., Yoshizawa, Kazunori

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Anopheles coluzzii stearoyl-CoA desaturase is essential for adult female survival and reproduction upon blood feeding von Ferdous, Zannatul, Fuchs, Silke, Behrends, Volker, Trasanidis, Nikolaos, Waterhouse, Robert M., Vlachou, Dina, Christophides, George K.

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Evolutionary Dynamics of Abundant Stop Codon Readthrough von Jungreis, Irwin, Chan, Clara S, Waterhouse, Robert M, Fields, Gabriel, Lin, Michael F, Kellis, Manolis

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Leucine-Rich Repeat Protein Complex Activates Mosquito Complement in Defense Against Plasmodium Parasites von Povelones, Michael, Waterhouse, Robert M, Kafatos, Fotis C, Christophides, George K

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Mycobacterium abscessus resists the innate cellular response by surviving cell lysis of infected phagocytes von Touré, Hamadoun, Galindo, Lee Ann, Lagune, Marion, Glatigny, Simon, Waterhouse, Robert M, Guénal, Isabelle, Herrmann, Jean-Louis, Girard-Misguich, Fabienne, Szuplewski, Sébastien

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RADSex: A computational workflow to study sex determination using restriction site‐associated DNA sequencing data von Feron, Romain, Pan, Qiaowei, Wen, Ming, Imarazene, Boudjema, Jouanno, Elodie, Anderson, Jennifer, Herpin, Amaury, Journot, Laurent, Parrinello, Hugues, Klopp, Christophe, Kottler, Verena A., Roco, Alvaro S., Du, Kang, Kneitz, Susanne, Adolfi, Mateus, Wilson, Catherine A., McCluskey, Braedan, Amores, Angel, Desvignes, Thomas, Goetz, Frederick W., Takanashi, Ato, Kawaguchi, Mari, Detrich, Harry William, Oliveira, Marcos A., Nóbrega, Rafael H., Sakamoto, Takashi, Nakamoto, Masatoshi, Wargelius, Anna, Karlsen, Ørjan, Wang, Zhongwei, Stöck, Matthias, Waterhouse, Robert M., Braasch, Ingo, Postlethwait, John H., Schartl, Manfred, Guiguen, Yann

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Anopheles mosquitoes reveal new principles of 3D genome organization in insects von Lukyanchikova, Varvara, Nuriddinov, Miroslav, Belokopytova, Polina, Taskina, Alena, Liang, Jiangtao, Reijnders, Maarten J. M. F., Ruzzante, Livio, Feron, Romain, Waterhouse, Robert M., Wu, Yang, Mao, Chunhong, Tu, Zhijian, Sharakhov, Igor V., Fishman, Veniamin

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