Backmapping triangulated surfaces to coarse-grained membrane models von Pezeshkian, Weria, König, Melanie, Wassenaar, Tsjerk A., Marrink, Siewert J.

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Going Backward: A Flexible Geometric Approach to Reverse Transformation from Coarse Grained to Atomistic Models von Wassenaar, Tsjerk A, Pluhackova, Kristyna, Böckmann, Rainer A, Marrink, Siewert J, Tieleman, D. Peter

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Improved Parameters for the Martini Coarse-Grained Protein Force Field von de Jong, Djurre H, Singh, Gurpreet, Bennett, W. F. Drew, Arnarez, Clement, Wassenaar, Tsjerk A, Schäfer, Lars V, Periole, Xavier, Tieleman, D. Peter, Marrink, Siewert J

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Dynamic Cholesterol-Conditioned Dimerization of the G Protein Coupled Chemokine Receptor Type 4 von Pluhackova, Kristyna, Gahbauer, Stefan, Kranz, Franziska, Wassenaar, Tsjerk A, Böckmann, Rainer A

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LION/web: a web-based ontology enrichment tool for lipidomic data analysis von Molenaar, Martijn R, Jeucken, Aike, Wassenaar, Tsjerk A, van de Lest, Chris H A, Brouwers, Jos F, Helms, J Bernd

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Martini 3: a general purpose force field for coarse-grained molecular dynamics von Souza, Paulo C. T., Alessandri, Riccardo, Barnoud, Jonathan, Thallmair, Sebastian, Faustino, Ignacio, Grünewald, Fabian, Patmanidis, Ilias, Abdizadeh, Haleh, Bruininks, Bart M. H., Wassenaar, Tsjerk A., Kroon, Peter C., Melcr, Josef, Nieto, Vincent, Corradi, Valentina, Khan, Hanif M., Domański, Jan, Javanainen, Matti, Martinez-Seara, Hector, Reuter, Nathalie, Best, Robert B., Vattulainen, Ilpo, Monticelli, Luca, Periole, Xavier, Tieleman, D. Peter, de Vries, Alex H., Marrink, Siewert J.

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Relationship Between CYP2A6 and CHRNA5-CHRNA3-CHRNB4 Variation and Smoking Behaviors and Lung Cancer Risk von Wassenaar, Catherine A., Dong, Qiong, Wei, Qingyi, Amos, Christopher I., Spitz, Margaret R., Tyndale, Rachel F.

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Lipid–Protein Interactions Are Unique Fingerprints for Membrane Proteins von Corradi, Valentina, Mendez-Villuendas, Eduardo, Ingólfsson, Helgi I, Gu, Ruo-Xu, Siuda, Iwona, Melo, Manuel N, Moussatova, Anastassiia, DeGagné, Lucien J, Sejdiu, Besian I, Singh, Gurpreet, Wassenaar, Tsjerk A, Delgado Magnero, Karelia, Marrink, Siewert J, Tieleman, D. Peter

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Dopamine transporter oligomerization involves the scaffold domain, but spares the bundle domain von Jayaraman, Kumaresan, Morley, Alex N, Szöllősi, Daniel, Wassenaar, Tsjerk A, Sitte, Harald H, Stockner, Thomas

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Activation of the bacterial thermosensor DesK involves a serine zipper dimerization motif that is modulated by bilayer thickness von Cybulski, Larisa Estefanía, Ballering, Joost, Moussatova, Anastassiia, Inda, Maria Eugenia, Vazquez, Daniela B., Wassenaar, Tsjerk A., de Mendoza, Diego, Tieleman, D. Peter, Killian, J. Antoinette

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Multinational development and validation of an early prediction model for delirium in ICU patients von Wassenaar, A., van den Boogaard, M., van Achterberg, T., Slooter, A. J. C., Kuiper, M. A., Hoogendoorn, M. E., Simons, K. S., Maseda, E., Pinto, N., Jones, C., Luetz, A., Schandl, A., Verbrugghe, W., Aitken, L. M., van Haren, F. M. P., Donders, A. R. T., Schoonhoven, L., Pickkers, P.

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Synaptobrevin Transmembrane Domain Dimerization Studied by Multiscale Molecular Dynamics Simulations von Han, Jing, Pluhackova, Kristyna, Wassenaar, Tsjerk A., Böckmann, Rainer A.

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CYP2A6 reduced activity gene variants confer reduction in lung cancer risk in African American smokers--findings from two independent populations von Wassenaar, Catherine A, Ye, Yuanqing, Cai, Qiuyin, Aldrich, Melinda C, Knight, Joanne, Spitz, Margaret R, Wu, Xifeng, Blot, William J, Tyndale, Rachel F

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Structural Aspects of the ROS1 Kinase Domain and Oncogenic Mutations von Vilachã, Juliana F, Wassenaar, Tsjerk A, Marrink, Siewert J

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Thermodynamic and kinetic characterization of transmembrane helix association von Pawar, Aiswarya B, Deshpande, Sneha A, Gopal, Srinivasa M, Wassenaar, Tsjerk A, Athale, Chaitanya A, Sengupta, Durba

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Competing Roles of Ca2+ and Nonmuscle Myosin IIA on the Dynamics of the Metastasis-Associated Protein S100A4 von Yildirim, Ahmet, Tekpinar, Mustafa, Wassenaar, Tsjerk A

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Constraint-Induced Movement Therapy Results in Increased Motor Map Area in Subjects 3 to 9 Months After Stroke von Sawaki, Lumy, Butler, Andrew J., Xiaoyan Leng, Wassenaar, Peter A., Mohammad, Yousef M., Blanton, Sarah, Sathian, K., Nichols-Larsen, Deborah S., Wolf, Steven L., Good, David C., Wittenberg, George F.

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Competing Roles of Ca 2+ and Nonmuscle Myosin IIA on the Dynamics of the Metastasis-Associated Protein S100A4 von Yildirim, Ahmet, Tekpinar, Mustafa, Wassenaar, Tsjerk A

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Lipid Organization of the Plasma Membrane von Ingólfsson, Helgi I, Melo, Manuel N, van Eerden, Floris J, Arnarez, Clément, Lopez, Cesar A, Wassenaar, Tsjerk A, Periole, Xavier, de Vries, Alex H, Tieleman, D. Peter, Marrink, Siewert J

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Molecular architecture and dynamics of SARS-CoV-2 envelope by integrative modeling von Pezeshkian, Weria, Grünewald, Fabian, Narykov, Oleksandr, Lu, Senbao, Arkhipova, Valeria, Solodovnikov, Alexey, Wassenaar, Tsjerk A., Marrink, Siewert J., Korkin, Dmitry

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