Deciphering temporal growth patterns in maize: integrative modeling of phenotype dynamics and underlying genomic variations von Adak, Alper, Murray, Seth C, Washburn, Jacob

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Evolutionarily informed deep learning methods for predicting relative transcript abundance from DNA sequence von Washburn, Jacob D., Mejia-Guerra, Maria Katherine, Ramstein, Guillaume, Kremling, Karl A., Valluru, Ravi, Buckler, Edward S., Wang, Hai

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Subgenome Dominance in an Interspecific Hybrid, Synthetic Allopolyploid, and a 140-Year-Old Naturally Established Neo-Allopolyploid Monkeyflower von Edger, Patrick P., McKain, Michael R., Cooley, Arielle M., Vallejo-Marin, Mario, Yuan, Yaowu, Bewick, Adam J., Ji, Lexiang, Platts, Adrian E., Bowman, Megan J., Childs, Kevin L., Washburn, Jacob D., Schmitz, Robert J., Smith, Gregory D., Pires, J. Chris, Puzey, Joshua R.

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Enhancing the resilience of plant systems to climate change von Braun, David M, Washburn, Jacob D, Wood, Jeffrey D

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Trait association and prediction through integrative k‐mer analysis von He, Cheng, Washburn, Jacob D., Schleif, Nathaniel, Hao, Yangfan, Kaeppler, Heidi, Kaeppler, Shawn M., Zhang, Zhiwu, Yang, Jinliang, Liu, Sanzhen

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Leveraging data from the Genomes-to-Fields Initiative to investigate genotype-by-environment interactions in maize in North America von Lopez-Cruz, Marco, Aguate, Fernando M., Washburn, Jacob D., de Leon, Natalia, Kaeppler, Shawn M., Lima, Dayane Cristina, Tan, Ruijuan, Thompson, Addie, De La Bretonne, Laurence Willard, de los Campos, Gustavo

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Predicting phenotypes from genetic, environment, management, and historical data using CNNs von Washburn, Jacob D., Cimen, Emre, Ramstein, Guillaume, Reeves, Timothy, O’Briant, Patrick, McLean, Greg, Cooper, Mark, Hammer, Graeme, Buckler, Edward S.

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Pedigree or identity? How genome editing can fundamentally change the path for crop development von Brower-Toland, Brent, Shyu, Christine, Vega-Sanchez, Miguel E, Slewinski, Thomas L

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Phylogeny and photosynthesis of the grass tribe Paniceae von Washburn, Jacob D., Schnable, James C., Davidse, Gerrit, Pires, J. Chris

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The contributions from the progenitor genomes of the mesopolyploid Brassiceae are evolutionarily distinct but functionally compatible von Hao, Yue, Mabry, Makenzie E., Edger, Patrick P., Freeling, Michael, Zheng, Chunfang, Jin, Lingling, VanBuren, Robert, Colle, Marivi, An, Hong, Abrahams, R. Shawn, Washburn, Jacob D., Qi, Xinshuai, Barry, Kerrie, Daum, Christopher, Shu, Shengqiang, Schmutz, Jeremy, Sankoff, David, Barker, Michael S., Lyons, Eric, Pires, J. Chris, Conant, Gavin C.

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GWAS analysis of maize host plant resistance to western corn rootworm (Coleoptera: Chrysomelidae) reveals candidate small effect loci for resistance breeding von Washburn, Jacob D., LaFond, Harper F., Lapadatescu, Martian C., Pereira, Adriano E., Erb, Matthias, Hibbard, Bruce E.

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Phylogeny and multiple independent whole‐genome duplication events in the Brassicales von Mabry, Makenzie E., Brose, Julia M., Blischak, Paul D., Sutherland, Brittany, Dismukes, Wade T., Bottoms, Christopher A., Edger, Patrick P., Washburn, Jacob D., An, Hong, Hall, Jocelyn C., McKain, Michael R., Al‐Shehbaz, Ihsan, Barker, Michael S., Schranz, M. Eric, Conant, Gavin C., Pires, J. Chris

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Ensemble of best linear unbiased predictor, machine learning and deep learning models predict maize yield better than each model alone von Kick, Daniel R, Washburn, Jacob D

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Yield prediction through integration of genetic, environment, and management data through deep learning von Kick, Daniel R, Wallace, Jason G, Schnable, James C, Kolkman, Judith M, Alaca, Barış, Beissinger, Timothy M, Edwards, Jode, Ertl, David, Flint-Garcia, Sherry, Gage, Joseph L, Hirsch, Candice N, Knoll, Joseph E, de Leon, Natalia, Lima, Dayane C, Moreta, Danilo E, Singh, Maninder P, Thompson, Addie, Weldekidan, Teclemariam, Washburn, Jacob D

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Genome-Guided Phylo-Transcriptomic Methods and the Nuclear Phylogentic Tree of the Paniceae Grasses von Washburn, Jacob D, Schnable, James C, Conant, Gavin C, Brutnell, Thomas P, Shao, Ying, Zhang, Yang, Ludwig, Martha, Davidse, Gerrit, Pires, J Chris

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RootBot: High‐throughput root stress phenotyping robot von Ruppel, Mia, Nelson, Sven K., Sidberry, Grace, Mitchell, Madison, Kick, Daniel, Thomas, Shawn K., Guill, Katherine E., Oliver, Melvin J., Washburn, Jacob D.

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Progressive heterosis in genetically defined tetraploid maize von Washburn, Jacob D., McElfresh, Mitchell J., Birchler, James A.

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CONVERGENT EVOLUTION AND THE ORIGIN OF COMPLEX PHENOTYPES IN THE AGE OF SYSTEMS BIOLOGY von Washburn, Jacob D., Bird, Kevin A., Conant, Gavin C., Pires, J. Chris

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Polyploids as a “model system” for the study of heterosis von Washburn, Jacob D, Birchler, James A

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Watching the grin fade: Tracing the effects of polyploidy on different evolutionary time scales von Mayfield-Jones, Dustin, Washburn, Jacob D., Arias, Tatiana, Edger, Patrick P., Pires, J. Chris, Conant, Gavin C.

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