Fusobacterium nucleatum infection is prevalent in human colorectal carcinoma von Castellarin, Mauro, Warren, René L, Freeman, J Douglas, Dreolini, Lisa, Krzywinski, Martin, Strauss, Jaclyn, Barnes, Rebecca, Watson, Peter, Allen-Vercoe, Emma, Moore, Richard A, Holt, Robert A

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ARCS: scaffolding genome drafts with linked reads von Yeo, Sarah, Coombe, Lauren, Warren, René L, Chu, Justin, Birol, Inanç

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ABySS 2.0: resource-efficient assembly of large genomes using a Bloom filter von Jackman, Shaun D, Vandervalk, Benjamin P, Mohamadi, Hamid, Chu, Justin, Yeo, Sarah, Hammond, S Austin, Jahesh, Golnaz, Khan, Hamza, Coombe, Lauren, Warren, Rene L, Birol, Inanc

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ntEdit: scalable genome sequence polishing von Warren, René L, Coombe, Lauren, Mohamadi, Hamid, Zhang, Jessica, Jaquish, Barry, Isabel, Nathalie, Jones, Steven J M, Bousquet, Jean, Bohlmann, Joerg, Birol, Inanç

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HLA predictions from the bronchoalveolar lavage fluid and blood samples of eight COVID-19 patients at the pandemic onset von Warren, René L, Birol, Inanç

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AMPlify: attentive deep learning model for discovery of novel antimicrobial peptides effective against WHO priority pathogens von Li, Chenkai, Sutherland, Darcy, Hammond, S Austin, Yang, Chen, Taho, Figali, Bergman, Lauren, Houston, Simon, Warren, René L, Wong, Titus, Hoang, Linda M N, Cameron, Caroline E, Helbing, Caren C, Birol, Inanc

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LongStitch: high-quality genome assembly correction and scaffolding using long reads von Coombe, Lauren, Li, Janet X., Lo, Theodora, Wong, Johnathan, Nikolic, Vladimir, Warren, Rene L., Birol, Inanc

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Exhaustive T-cell repertoire sequencing of human peripheral blood samples reveals signatures of antigen selection and a directly measured repertoire size of at least 1 million clon... von Warren, René L, Freeman, J Douglas, Zeng, Thomas, Choe, Gina, Munro, Sarah, Moore, Richard, Webb, John R, Holt, Robert A

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Mutational evolution in a lobular breast tumour profiled at single nucleotide resolution von Morin, Ryan D, Holt, Robert A, Varhol, Richard, Zhao, Yongjun, Gelmon, Karen, Leung, Gillian, Hirst, Martin, Watson, Peter, Steidl, Christian, Moore, Richard, Jones, Steven, Tse, Kane, Khattra, Jaswinder, Caldas, Carlos, Senz, Janine, Warren, René L, Delaney, Allen, Pugh, Trevor, Marra, Marco A, Sun, Mark, Burleigh, Angela, Taylor, Greg A, Guliany, Ryan, Aparicio, Samuel, Prentice, Leah, Shah, Sohrab P, Teschendorff, Andrew E, Huntsman, David, Turashvili, Gulisa, Severson, Tesa

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ARKS: chromosome-scale scaffolding of human genome drafts with linked read kmers von Coombe, Lauren, Zhang, Jessica, Vandervalk, Benjamin P, Chu, Justin, Jackman, Shaun D, Birol, Inanc, Warren, René L

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Models and data of AMPlify: a deep learning tool for antimicrobial peptide prediction von Li, Chenkai, Warren, René L, Birol, Inanc

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Assembling millions of short DNA sequences using SSAKE von Warren, René L., Sutton, Granger G., Jones, Steven J. M., Holt, Robert A.

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HLA alleles measured from COVID-19 patient transcriptomes reveal associations with disease prognosis in a New York cohort von Warren, Rene L., Birol, Inanc

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Complete Haplotype Sequence of the Human Immunoglobulin Heavy-Chain Variable, Diversity, and Joining Genes and Characterization of Allelic and Copy-Number Variation von Watson, Corey T., Steinberg, Karyn M., Huddleston, John, Warren, Rene L., Malig, Maika, Schein, Jacqueline, Willsey, A. Jeremy, Joy, Jeffrey B., Scott, Jamie K., Graves, Tina A., Wilson, Richard K., Holt, Robert A., Eichler, Evan E., Breden, Felix

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Brain microbial populations in HIV/AIDS: α-proteobacteria predominate independent of host immune status von Branton, William G, Ellestad, Kristofor K, Maingat, Ferdinand, Wheatley, B Matt, Rud, Erling, Warren, René L, Holt, Robert A, Surette, Michael G, Power, Christopher

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Tigmint: correcting assembly errors using linked reads from large molecules von Jackman, Shaun D, Coombe, Lauren, Chu, Justin, Warren, Rene L, Vandervalk, Benjamin P, Yeo, Sarah, Xue, Zhuyi, Mohamadi, Hamid, Bohlmann, Joerg, Jones, Steven J M, Birol, Inanc

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RNA-Bloom enables reference-free and reference-guided sequence assembly for single-cell transcriptomes von Nip, Ka Ming, Chiu, Readman, Yang, Chen, Chu, Justin, Mohamadi, Hamid, Warren, Rene L., Birol, Inanc

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Sealer: a scalable gap-closing application for finishing draft genomes von Paulino, Daniel, Warren, René L, Vandervalk, Benjamin P, Raymond, Anthony, Jackman, Shaun D, Birol, Inanç

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Reference-free assembly of long-read transcriptome sequencing data with RNA-Bloom2 von Nip, Ka Ming, Hafezqorani, Saber, Gagalova, Kristina K., Chiu, Readman, Yang, Chen, Warren, René L., Birol, Inanc

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LINKS: Scalable, alignment-free scaffolding of draft genomes with long reads von Warren, René L, Yang, Chen, Vandervalk, Benjamin P, Behsaz, Bahar, Lagman, Albert, Jones, Steven J M, Birol, Inanç

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