RnBeads 2.0: comprehensive analysis of DNA methylation data von Müller, Fabian, Scherer, Michael, Assenov, Yassen, Lutsik, Pavlo, Walter, Jörn, Lengauer, Thomas, Bock, Christoph

Volltext

Comprehensive analysis of DNA methylation data with RnBeads von Assenov, Yassen, Müller, Fabian, Lutsik, Pavlo, Walter, Jörn, Lengauer, Thomas, Bock, Christoph

Volltext

Epigenetic Reprogramming in Mammalian Development von Reik, Wolf, Dean, Wendy, Walter, Jörn

Volltext

In vivo control of CpG and non-CpG DNA methylation by DNA methyltransferases von Arand, Julia, Spieler, David, Karius, Tommy, Branco, Miguel R, Meilinger, Daniela, Meissner, Alexander, Jenuwein, Thomas, Xu, Guoliang, Leonhardt, Heinrich, Wolf, Verena, Walter, Jörn

Volltext

The Dynamics of Genome-wide DNA Methylation Reprogramming in Mouse Primordial Germ Cells von Seisenberger, Stefanie, Andrews, Simon, Krueger, Felix, Arand, Julia, Walter, Jörn, Santos, Fátima, Popp, Christian, Thienpont, Bernard, Dean, Wendy, Reik, Wolf

Volltext

Peptide-specific recognition of human cytomegalovirus strains controls adaptive natural killer cells von Hammer, Quirin, Rückert, Timo, Borst, Eva Maria, Dunst, Josefine, Haubner, André, Durek, Pawel, Heinrich, Frederik, Gasparoni, Gilles, Babic, Marina, Tomic, Adriana, Pietra, Gabriella, Nienen, Mikalai, Blau, Igor Wolfgang, Hofmann, Jörg, Na, Il-Kang, Prinz, Immo, Koenecke, Christian, Hemmati, Philipp, Babel, Nina, Arnold, Renate, Walter, Jörn, Thurley, Kevin, Mashreghi, Mir-Farzin, Messerle, Martin, Romagnani, Chiara

Volltext

MeDeCom: discovery and quantification of latent components of heterogeneous methylomes von Lutsik, Pavlo, Slawski, Martin, Gasparoni, Gilles, Vedeneev, Nikita, Hein, Matthias, Walter, Jörn

Volltext

Whole-Genome Bisulfite Sequencing of Two Distinct Interconvertible DNA Methylomes of Mouse Embryonic Stem Cells von Habibi, Ehsan, Brinkman, Arie B., Arand, Julia, Kroeze, Leonie I., Kerstens, Hindrik H.D., Matarese, Filomena, Lepikhov, Konstantin, Gut, Marta, Brun-Heath, Isabelle, Hubner, Nina C., Benedetti, Rosaria, Altucci, Lucia, Jansen, Joop H., Walter, Jörn, Gut, Ivo G., Marks, Hendrik, Stunnenberg, Hendrik G.

Volltext

EpiSegMix: a flexible distribution hidden Markov model with duration modeling for chromatin state discovery von Schmitz, Johanna Elena, Aggarwal, Nihit, Laufer, Lukas, Walter, Jörn, Salhab, Abdulrahman, Rahmann, Sven

Volltext

BiQ Analyzer HT: locus-specific analysis of DNA methylation by high-throughput bisulfite sequencing von Lutsik, Pavlo, Feuerbach, Lars, Arand, Julia, Lengauer, Thomas, Walter, Jörn, Bock, Christoph

Volltext

Quantitative comparison of within-sample heterogeneity scores for DNA methylation data von Scherer, Michael, Nebel, Almut, Franke, Andre, Walter, Joern, Lengauer, Thomas, Bock, Christoph, Mueller, Fabian, List, Markus

Volltext

GeneTrail 3: advanced high-throughput enrichment analysis von Gerstner, Nico, Kehl, Tim, Lenhof, Kerstin, Müller, Anne, Mayer, Carolin, Eckhart, Lea, Grammes, Nadja Liddy, Diener, Caroline, Hart, Martin, Hahn, Oliver, Walter, Jörn, Wyss-Coray, Tony, Meese, Eckart, Keller, Andreas, Lenhof, Hans-Peter

Volltext

Dnmt1 has de novo activity targeted to transposable elements von Haggerty, Chuck, Kretzmer, Helene, Riemenschneider, Christina, Kumar, Abhishek Sampath, Mattei, Alexandra L., Bailly, Nina, Gottfreund, Judith, Giesselmann, Pay, Weigert, Raha, Brändl, Björn, Giehr, Pascal, Buschow, René, Galonska, Christina, von Meyenn, Ferdinand, Pappalardi, Melissa B., McCabe, Michael T., Wittler, Lars, Giesecke-Thiel, Claudia, Mielke, Thorsten, Meierhofer, David, Timmermann, Bernd, Müller, Franz-Josef, Walter, Jörn, Meissner, Alexander

Volltext

Promiscuous gene expression in thymic epithelial cells is regulated at multiple levels von Derbinski, Jens, Gäbler, Jana, Brors, Benedikt, Tierling, Sascha, Jonnakuty, Sunitha, Hergenhahn, Manfred, Peltonen, Leena, Walter, Jörn, Kyewski, Bruno

Volltext

FGF Signaling Inhibition in ESCs Drives Rapid Genome-wide Demethylation to the Epigenetic Ground State of Pluripotency von Ficz, Gabriella, Hore, Timothy A., Santos, Fátima, Lee, Heather J., Dean, Wendy, Arand, Julia, Krueger, Felix, Oxley, David, Paul, Yu-Lee, Walter, Jörn, Cook, Simon J., Andrews, Simon, Branco, Miguel R., Reik, Wolf

Volltext

Exposure to the gut microbiota drives distinct methylome and transcriptome changes in intestinal epithelial cells during postnatal development von Pan, Wei-Hung, Sommer, Felix, Falk-Paulsen, Maren, Ulas, Thomas, Best, Philipp, Fazio, Antonella, Kachroo, Priyadarshini, Luzius, Anne, Jentzsch, Marlene, Rehman, Ateequr, Müller, Fabian, Lengauer, Thomas, Walter, Jörn, Künzel, Sven, Baines, John F, Schreiber, Stefan, Franke, Andre, Schultze, Joachim L, Bäckhed, Fredrik, Rosenstiel, Philip

Volltext

Dynamic link of DNA demethylation, DNA strand breaks and repair in mouse zygotes von Wossidlo, Mark, Arand, Julia, Sebastiano, Vittorio, Lepikhov, Konstantin, Boiani, Michele, Reinhardt, Richard, Schöler, Hans, Walter, Jörn

Volltext

MERVL/Zscan4 Network Activation Results in Transient Genome-wide DNA Demethylation of mESCs von Eckersley-Maslin, Mélanie A., Svensson, Valentine, Krueger, Christel, Stubbs, Thomas M., Giehr, Pascal, Krueger, Felix, Miragaia, Ricardo J., Kyriakopoulos, Charalampos, Berrens, Rebecca V., Milagre, Inês, Walter, Jörn, Teichmann, Sarah A., Reik, Wolf

Volltext

A meta-analysis of epigenome-wide association studies in Alzheimer’s disease highlights novel differentially methylated loci across cortex von Smith, Rebecca G., Pishva, Ehsan, Shireby, Gemma, Smith, Adam R., Roubroeks, Janou A. Y., Hannon, Eilis, Wheildon, Gregory, Mastroeni, Diego, Gasparoni, Gilles, Riemenschneider, Matthias, Giese, Armin, Sharp, Andrew J., Schalkwyk, Leonard, Haroutunian, Vahram, Viechtbauer, Wolfgang, van den Hove, Daniel L. A., Weedon, Michael, Brokaw, Danielle, Francis, Paul T., Thomas, Alan J., Love, Seth, Morgan, Kevin, Walter, Jörn, Coleman, Paul D., Bennett, David A., De Jager, Philip L., Mill, Jonathan, Lunnon, Katie

Volltext

Transmission of trained immunity and heterologous resistance to infections across generations von Katzmarski, Natalie, Domínguez-Andrés, Jorge, Cirovic, Branko, Renieris, Georgios, Ciarlo, Eleonora, Le Roy, Didier, Lepikhov, Konstantin, Kattler, Kathrin, Gasparoni, Gilles, Händler, Kristian, Theis, Heidi, Beyer, Marc, van der Meer, Jos W. M., Joosten, Leo A. B., Walter, Jörn, Schultze, Joachim L., Roger, Thierry, Giamarellos-Bourboulis, Evangelos J., Schlitzer, Andreas, Netea, Mihai G.

Volltext